(16 nodes) Amino acid ABC transporter, permease protein, 3-TM domain, and Bacterial periplasmic substrate-binding proteins network (Martelella endophytica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJY44961.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	AJY44962.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (262 aa)
	AJY45785.1	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	AJY45786.1	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	AJY48171.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa)
	AJY46285.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
	AJY46286.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	AJY46291.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
	AJY48172.1	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
	AJY47508.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
	AJY48398.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
	AJY47509.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
	AJY47539.1	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
	AJY47540.1	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
	AJY47541.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)
	AJY47542.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)

Your Current Organism:

Martelella endophytica

NCBI taxonomy Id: 1486262
Other names: KCCM 43011, M. endophytica, Martelella endophytica Bibi et al. 2013, NBRC 109149, strain YC6887

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJY44961.1	AJY44962.1	TM49_03490	TM49_03495	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	0.990
AJY44961.1	AJY45785.1	TM49_03490	TM49_08930	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.854
AJY44961.1	AJY45786.1	TM49_03490	TM49_08935	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
AJY44961.1	AJY46285.1	TM49_03490	TM49_12360	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.600
AJY44961.1	AJY46286.1	TM49_03490	TM49_12365	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
AJY44961.1	AJY46291.1	TM49_03490	TM49_12390	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
AJY44961.1	AJY47508.1	TM49_03490	TM49_20475	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.820
AJY44961.1	AJY47509.1	TM49_03490	TM49_20485	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.474
AJY44961.1	AJY47539.1	TM49_03490	TM49_20670	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.781
AJY44961.1	AJY47540.1	TM49_03490	TM49_20675	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
AJY44961.1	AJY47541.1	TM49_03490	TM49_20680	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.539
AJY44961.1	AJY47542.1	TM49_03490	TM49_20685	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.525
AJY44961.1	AJY48171.1	TM49_03490	TM49_12350	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.740
AJY44961.1	AJY48172.1	TM49_03490	TM49_12400	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.883
AJY44961.1	AJY48398.1	TM49_03490	TM49_20480	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
AJY44962.1	AJY44961.1	TM49_03495	TM49_03490	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AJY44962.1	AJY45786.1	TM49_03495	TM49_08935	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
AJY44962.1	AJY46285.1	TM49_03495	TM49_12360	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
AJY44962.1	AJY47509.1	TM49_03495	TM49_20485	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
AJY44962.1	AJY47539.1	TM49_03495	TM49_20670	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768