(5 nodes) ABC transporter, Choline, ATP-binding subunit, and Amine transmembrane transporter activity network (Martelella endophytica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJY45233.1	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	AJY45234.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
	AJY45235.1	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
	AJY45681.1	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
	AJY45853.1	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)

Your Current Organism:

Martelella endophytica

NCBI taxonomy Id: 1486262
Other names: KCCM 43011, M. endophytica, Martelella endophytica Bibi et al. 2013, NBRC 109149, strain YC6887

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJY45233.1	AJY45234.1	TM49_05260	TM49_05265	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AJY45233.1	AJY45235.1	TM49_05260	TM49_05270	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
AJY45233.1	AJY45681.1	TM49_05260	TM49_08300	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
AJY45233.1	AJY45853.1	TM49_05260	TM49_09455	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
AJY45234.1	AJY45233.1	TM49_05265	TM49_05260	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AJY45234.1	AJY45235.1	TM49_05265	TM49_05270	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AJY45234.1	AJY45681.1	TM49_05265	TM49_08300	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AJY45234.1	AJY45853.1	TM49_05265	TM49_09455	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
AJY45235.1	AJY45233.1	TM49_05270	TM49_05260	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
AJY45235.1	AJY45234.1	TM49_05270	TM49_05265	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AJY45235.1	AJY45681.1	TM49_05270	TM49_08300	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AJY45235.1	AJY45853.1	TM49_05270	TM49_09455	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
AJY45681.1	AJY45233.1	TM49_08300	TM49_05260	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
AJY45681.1	AJY45234.1	TM49_08300	TM49_05265	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AJY45681.1	AJY45235.1	TM49_08300	TM49_05270	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AJY45681.1	AJY45853.1	TM49_08300	TM49_09455	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
AJY45853.1	AJY45233.1	TM49_09455	TM49_05260	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
AJY45853.1	AJY45234.1	TM49_09455	TM49_05265	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
AJY45853.1	AJY45235.1	TM49_09455	TM49_05270	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
AJY45853.1	AJY45681.1	TM49_09455	TM49_08300	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977