(19 nodes) Mixed, incl. ABC transporter, TroCD-like, and Ferric-uptake regulator network (Martelella endophytica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJY45082.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	AJY47920.1	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	AJY45083.1	Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family. (310 aa)
	AJY45084.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (603 aa)
	AJY48099.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (101 aa)
	AJY45917.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
	AJY48202.1	Zinc transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	znuC	Zinc ABC transporter ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family. (275 aa)
	AJY48203.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	fur	Fur family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family. (134 aa)
	AJY46662.1	CoA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
	mntH	Manganese transport protein MntH; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family. (435 aa)
	AJY46688.1	Manganese transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)
	AJY48247.1	Transcription initiation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (112 aa)
	fur-2	Fur family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family. (137 aa)
	AJY47772.1	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family. (306 aa)
	AJY47773.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	AJY47774.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
	fur-3	Fur family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family. (133 aa)

Your Current Organism:

Martelella endophytica

NCBI taxonomy Id: 1486262
Other names: KCCM 43011, M. endophytica, Martelella endophytica Bibi et al. 2013, NBRC 109149, strain YC6887

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJY45082.1	AJY45083.1	TM49_04270	TM49_04280	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	0.981
AJY45082.1	AJY45084.1	TM49_04270	TM49_04285	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.538
AJY45082.1	AJY47772.1	TM49_04270	TM49_22165	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	0.922
AJY45082.1	AJY47773.1	TM49_04270	TM49_22175	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.882
AJY45082.1	AJY47774.1	TM49_04270	TM49_22180	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
AJY45082.1	AJY47920.1	TM49_04270	TM49_04275	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
AJY45082.1	AJY48202.1	TM49_04270	TM49_13285	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Zinc transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.753
AJY45082.1	AJY48203.1	TM49_04270	TM49_13295	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AJY45082.1	fur	TM49_04270	TM49_13300	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fur family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family.	0.462
AJY45082.1	fur-3	TM49_04270	TM49_22185	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fur family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family.	0.406
AJY45083.1	AJY45082.1	TM49_04280	TM49_04270	Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
AJY45083.1	AJY45084.1	TM49_04280	TM49_04285	Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
AJY45083.1	AJY47773.1	TM49_04280	TM49_22175	Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
AJY45083.1	AJY47774.1	TM49_04280	TM49_22180	Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
AJY45083.1	AJY47920.1	TM49_04280	TM49_04275	Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
AJY45083.1	AJY48203.1	TM49_04280	TM49_13295	Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.789
AJY45083.1	znuC	TM49_04280	TM49_13290	Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	Zinc ABC transporter ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.	0.668
AJY45084.1	AJY45082.1	TM49_04285	TM49_04270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.538
AJY45084.1	AJY45083.1	TM49_04285	TM49_04280	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family.	0.665
AJY45084.1	AJY47920.1	TM49_04285	TM49_04275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.528