(17 nodes) Replisome network (Martelella endophytica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJY46580.1	ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology. (613 aa)
	AJY44676.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (670 aa)
	AJY44677.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)
	AJY45015.1	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (193 aa)
	AJY45599.1	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
	dnaG	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (653 aa)
	priA	Primosome assembly protein PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (735 aa)
	AJY46188.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)
	AJY46189.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
	AJY48155.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (409 aa)
	AJY46231.1	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
	AJY46626.1	DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (494 aa)
	AJY46645.1	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)
	AJY47062.1	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
	AJY47295.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
	AJY47386.1	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)
	AJY47630.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)

Your Current Organism:

Martelella endophytica

NCBI taxonomy Id: 1486262
Other names: KCCM 43011, M. endophytica, Martelella endophytica Bibi et al. 2013, NBRC 109149, strain YC6887

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJY44676.1	AJY44677.1	TM49_01635	TM49_01640	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.892
AJY44676.1	AJY45599.1	TM49_01635	TM49_07790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
AJY44676.1	AJY46189.1	TM49_01635	TM49_11700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
AJY44676.1	AJY46231.1	TM49_01635	TM49_11960	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
AJY44676.1	AJY47062.1	TM49_01635	TM49_17495	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
AJY44676.1	AJY47295.1	TM49_01635	TM49_19070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
AJY44676.1	AJY47630.1	TM49_01635	TM49_21275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
AJY44676.1	AJY48155.1	TM49_01635	TM49_11940	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
AJY44676.1	dnaG	TM49_01635	TM49_10675	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	0.785
AJY44677.1	AJY44676.1	TM49_01640	TM49_01635	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.892
AJY45015.1	AJY46580.1	TM49_03840	TM49_14290	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.414
AJY45599.1	AJY44676.1	TM49_07790	TM49_01635	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
AJY45599.1	AJY46626.1	TM49_07790	TM49_14585	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.	0.737
AJY46189.1	AJY44676.1	TM49_11700	TM49_01635	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
AJY46189.1	AJY46626.1	TM49_11700	TM49_14585	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.	0.737
AJY46231.1	AJY44676.1	TM49_11960	TM49_01635	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
AJY46231.1	AJY46626.1	TM49_11960	TM49_14585	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.	0.737
AJY46580.1	AJY45015.1	TM49_14290	TM49_03840	ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.414
AJY46580.1	AJY47386.1	TM49_14290	TM49_19710	ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.486
AJY46626.1	AJY45599.1	TM49_14585	TM49_07790	DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.737