(8 nodes) ABC-type glycine betaine transport system, substrate-binding domain network (Martelella endophytica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJY45853.1	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
	AJY44914.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	AJY45233.1	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	AJY48324.1	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)
	AJY47014.1	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
	AJY48298.1	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
	AJY47074.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	AJY45221.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)

Your Current Organism:

Martelella endophytica

NCBI taxonomy Id: 1486262
Other names: KCCM 43011, M. endophytica, Martelella endophytica Bibi et al. 2013, NBRC 109149, strain YC6887

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJY44914.1	AJY45221.1	TM49_03175	TM49_05185	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AJY45221.1	AJY44914.1	TM49_05185	TM49_03175	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AJY45233.1	AJY45853.1	TM49_05260	TM49_09455	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
AJY45233.1	AJY47014.1	TM49_05260	TM49_17135	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AJY45233.1	AJY47074.1	TM49_05260	TM49_17595	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJY45233.1	AJY48298.1	TM49_05260	TM49_17140	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
AJY45233.1	AJY48324.1	TM49_05260	TM49_17955	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AJY45853.1	AJY45233.1	TM49_09455	TM49_05260	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
AJY45853.1	AJY47014.1	TM49_09455	TM49_17135	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935
AJY45853.1	AJY47074.1	TM49_09455	TM49_17595	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJY45853.1	AJY48298.1	TM49_09455	TM49_17140	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
AJY45853.1	AJY48324.1	TM49_09455	TM49_17955	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
AJY47014.1	AJY45233.1	TM49_17135	TM49_05260	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AJY47014.1	AJY45853.1	TM49_17135	TM49_09455	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935
AJY47014.1	AJY47074.1	TM49_17135	TM49_17595	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
AJY47014.1	AJY48298.1	TM49_17135	TM49_17140	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
AJY47014.1	AJY48324.1	TM49_17135	TM49_17955	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
AJY47074.1	AJY45233.1	TM49_17595	TM49_05260	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJY47074.1	AJY45853.1	TM49_17595	TM49_09455	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJY47074.1	AJY47014.1	TM49_17595	TM49_17135	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917