(11 nodes) Reverse transcriptase/Diguanylate cyclase domain network (Martelella endophytica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJY48302.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (474 aa)
	dinB-2	DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (435 aa)
	dinB	DNA repair protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (354 aa)
	AJY46869.1	Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (507 aa)
	AJY46564.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (860 aa)
	AJY46431.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (369 aa)
	AJY47659.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)
	AJY46375.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (963 aa)
	AJY46349.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
	AJY45686.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (421 aa)
	AJY48041.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (958 aa)

Your Current Organism:

Martelella endophytica

NCBI taxonomy Id: 1486262
Other names: KCCM 43011, M. endophytica, Martelella endophytica Bibi et al. 2013, NBRC 109149, strain YC6887

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJY45686.1	AJY46375.1	TM49_08335	TM49_12955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546
AJY45686.1	AJY46564.1	TM49_08335	TM49_14200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625
AJY46349.1	AJY46375.1	TM49_12795	TM49_12955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
AJY46349.1	AJY46564.1	TM49_12795	TM49_14200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625
AJY46375.1	AJY45686.1	TM49_12955	TM49_08335	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546
AJY46375.1	AJY46349.1	TM49_12955	TM49_12795	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
AJY46375.1	AJY46431.1	TM49_12955	TM49_13315	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.536
AJY46375.1	AJY46564.1	TM49_12955	TM49_14200	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945
AJY46375.1	AJY47659.1	TM49_12955	TM49_21480	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
AJY46375.1	AJY48041.1	TM49_12955	TM49_08250	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.735
AJY46375.1	AJY48302.1	TM49_12955	TM49_17215	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.509
AJY46431.1	AJY46375.1	TM49_13315	TM49_12955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.536
AJY46431.1	AJY46564.1	TM49_13315	TM49_14200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.624
AJY46564.1	AJY45686.1	TM49_14200	TM49_08335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625
AJY46564.1	AJY46349.1	TM49_14200	TM49_12795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625
AJY46564.1	AJY46375.1	TM49_14200	TM49_12955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945
AJY46564.1	AJY46431.1	TM49_14200	TM49_13315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.624
AJY46564.1	AJY47659.1	TM49_14200	TM49_21480	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
AJY46564.1	AJY48041.1	TM49_14200	TM49_08250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.695
AJY46564.1	AJY48302.1	TM49_14200	TM49_17215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558