STRINGSTRING
SHE32824.1 SHE32824.1 SHE32862.1 SHE32862.1 SHE32931.1 SHE32931.1 SHE32976.1 SHE32976.1 SHE33015.1 SHE33015.1 SHE33051.1 SHE33051.1 SHE33089.1 SHE33089.1 SHE33123.1 SHE33123.1 SHE64822.1 SHE64822.1 SHF15717.1 SHF15717.1 SHF38169.1 SHF38169.1 SHF62182.1 SHF62182.1 SHF62216.1 SHF62216.1 SHF62248.1 SHF62248.1 SHF62275.1 SHF62275.1 SHF62128.1 SHF62128.1 SHF62158.1 SHF62158.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SHE32824.1Ala-tRNA(Pro) hydrolase. (237 aa)
SHE32862.1Small-conductance mechanosensitive channel. (823 aa)
SHE32931.1Nudix-type nucleoside diphosphatase, YffH/AdpP family. (375 aa)
SHE32976.1Hypothetical protein. (152 aa)
SHE33015.1Cyclopropane-fatty-acyl-phospholipid synthase. (411 aa)
SHE33051.1Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family. (472 aa)
SHE33089.1Cysteine desulfurase family protein, VC1184 subfamily. (437 aa)
SHE33123.1BCCT, betaine/carnitine/choline family transporter; Belongs to the BCCT transporter (TC 2.A.15) family. (607 aa)
SHE64822.1Uncharacterized membrane protein. (259 aa)
SHF15717.1Cyclopropane-fatty-acyl-phospholipid synthase. (417 aa)
SHF38169.1Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family. (306 aa)
SHF62182.1Hypothetical protein. (431 aa)
SHF62216.1Hypothetical protein. (252 aa)
SHF62248.1Short-chain dehydrogenase. (243 aa)
SHF62275.1Protein of unknown function. (104 aa)
SHF62128.1anti-ECFsigma factor, ChrR. (218 aa)
SHF62158.1RNA polymerase sigma-70 factor, ECF subfamily. (217 aa)
Your Current Organism:
Litoreibacter ascidiaceicola
NCBI taxonomy Id: 1486859
Other names: CECT 8539, DSM 100566, KCTC 42050, L. ascidiaceicola, Litoreibacter ascidiaceicola Kim et al. 2014, Litoreibacter sp. RSS4-C1, strain RSS4-C1
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