(7 nodes) Peptidase M20, dimerisation domain network (Gammaproteobacteria bacterium MFB021)

Nodes:

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GY26_13555	Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)
	GY26_00675	Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)
	GY26_05185	Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)
	dapE	Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. (385 aa)
	GY26_08730	Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (374 aa)
	GY26_11835	Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology. (393 aa)
	GY26_11840	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (474 aa)

Your Current Organism:

Gammaproteobacteria bacterium MFB021

NCBI taxonomy Id: 1492922
Other names: G. bacterium MFB021, bacterium MFB021

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GY26_00675	GY26_11835	GY26_00675	GY26_11835	Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.442
GY26_00675	dapE	GY26_00675	GY26_07860	Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.	0.748
GY26_08730	GY26_11835	GY26_08730	GY26_11835	Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
GY26_08730	dapE	GY26_08730	GY26_07860	Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.	0.643
GY26_11835	GY26_00675	GY26_11835	GY26_00675	Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.442
GY26_11835	GY26_08730	GY26_11835	GY26_08730	Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
GY26_11835	GY26_11840	GY26_11835	GY26_11840	Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
GY26_11835	dapE	GY26_11835	GY26_07860	Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.	0.683
GY26_11840	GY26_11835	GY26_11840	GY26_11835	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
dapE	GY26_00675	GY26_07860	GY26_00675	Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.	Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
dapE	GY26_08730	GY26_07860	GY26_08730	Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.	Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.643
dapE	GY26_11835	GY26_07860	GY26_11835	Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.	Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.683