15 items (Vecturithrix granuli) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	U27_01843	A/G-specific adenine glycosylase. (222 aa)
	U27_02306	Exodeoxyribonuclease. (257 aa)
	U27_02583	DNA-directed DNA polymerase I. (803 aa)
	nfo	Probable endonuclease 4; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. (287 aa)
	U27_03037	DNA-3-methyladenine glycosylase I. (212 aa)
	U27_03164	ATP-dependent DNA ligase. (348 aa)
	ligA	DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. (680 aa)
	U27_03873	Metallo-beta-lactamase family protein RNase. (448 aa)
	U27_03953	HhH-GPD family protein. (225 aa)
	U27_04664	single-stranded-DNA-specific exonuclease RecJ. (560 aa)
	U27_05954	formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (276 aa)
	U27_06014	Phage SPO1 DNA polymerase-related protein. (240 aa)
	U27_06428	Hypothetical protein GobsU_26601. (93 aa)
	polA	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (907 aa)
	U27_01888	Putative DNA glycosylase. (224 aa)

Your Current Organism:

Vecturithrix granuli

NCBI taxonomy Id: 1499967
Other names: C. Vecturithrix granuli, Candidatus Vecturithrix granuli, bacterium UASB270

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
U27_01843	U27_01888	U27_01843	U27_01888	A/G-specific adenine glycosylase.	Putative DNA glycosylase.	0.753
U27_01843	U27_02306	U27_01843	U27_02306	A/G-specific adenine glycosylase.	Exodeoxyribonuclease.	0.991
U27_01843	U27_03037	U27_01843	U27_03037	A/G-specific adenine glycosylase.	DNA-3-methyladenine glycosylase I.	0.456
U27_01888	U27_01843	U27_01888	U27_01843	Putative DNA glycosylase.	A/G-specific adenine glycosylase.	0.753
U27_01888	U27_02306	U27_01888	U27_02306	Putative DNA glycosylase.	Exodeoxyribonuclease.	0.992
U27_01888	U27_02583	U27_01888	U27_02583	Putative DNA glycosylase.	DNA-directed DNA polymerase I.	0.864
U27_01888	U27_03953	U27_01888	U27_03953	Putative DNA glycosylase.	HhH-GPD family protein.	0.675
U27_01888	U27_05954	U27_01888	U27_05954	Putative DNA glycosylase.	formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.	0.811
U27_01888	nfo	U27_01888	U27_02693	Putative DNA glycosylase.	Probable endonuclease 4; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.	0.936
U27_01888	polA	U27_01888	U27_01359	Putative DNA glycosylase.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.864
U27_02306	U27_01843	U27_02306	U27_01843	Exodeoxyribonuclease.	A/G-specific adenine glycosylase.	0.991
U27_02306	U27_01888	U27_02306	U27_01888	Exodeoxyribonuclease.	Putative DNA glycosylase.	0.992
U27_02306	U27_02583	U27_02306	U27_02583	Exodeoxyribonuclease.	DNA-directed DNA polymerase I.	0.969
U27_02306	U27_03953	U27_02306	U27_03953	Exodeoxyribonuclease.	HhH-GPD family protein.	0.971
U27_02306	nfo	U27_02306	U27_02693	Exodeoxyribonuclease.	Probable endonuclease 4; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.	0.970
U27_02306	polA	U27_02306	U27_01359	Exodeoxyribonuclease.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.969
U27_02583	U27_01888	U27_02583	U27_01888	DNA-directed DNA polymerase I.	Putative DNA glycosylase.	0.864
U27_02583	U27_02306	U27_02583	U27_02306	DNA-directed DNA polymerase I.	Exodeoxyribonuclease.	0.969
U27_02583	U27_03037	U27_02583	U27_03037	DNA-directed DNA polymerase I.	DNA-3-methyladenine glycosylase I.	0.707
U27_02583	U27_03873	U27_02583	U27_03873	DNA-directed DNA polymerase I.	Metallo-beta-lactamase family protein RNase.	0.932