(21 nodes) GGDEF domain, and His Kinase A (phosphoacceptor) domain network (Burkholderia stagnalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOK52297.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (611 aa)
	AOK52479.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
	AOK52804.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (783 aa)
	AOK53428.1	dGTP triphosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (779 aa)
	AOK54019.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (611 aa)
	AOK54198.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (451 aa)
	AOK55187.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (761 aa)
	WT74_19535	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (527 aa)
	AOK54991.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (850 aa)
	AOK54992.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (1259 aa)
	AOK55006.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1694 aa)
	AOK55035.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
	AOK55053.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (591 aa)
	AOK55482.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
	AOK55483.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (897 aa)
	AOK55682.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (366 aa)
	AOK55958.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (750 aa)
	AOK56302.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (848 aa)
	AOK56414.1	Deoxyuridine 5'-triphosphate nucleotidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (588 aa)
	AOK57367.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (519 aa)
	AOK57381.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (754 aa)

Your Current Organism:

Burkholderia stagnalis

NCBI taxonomy Id: 1503054
Other names: B. stagnalis, Burkholderia sp. Bp6893, Burkholderia sp. Bp6916, Burkholderia sp. Bp7118, Burkholderia sp. Bp7119, Burkholderia sp. Bp7120, Burkholderia sp. Bp7137, Burkholderia sp. Bp7139, Burkholderia sp. Bp7142, Burkholderia sp. Bp7143, Burkholderia sp. Bp7145, Burkholderia sp. Bp7260, Burkholderia sp. Bp7266, Burkholderia sp. Bp7278, Burkholderia sp. Bp7280, Burkholderia sp. Bp7282, Burkholderia sp. Bp7288, Burkholderia sp. Bp7466, Burkholderia sp. Bp7469, Burkholderia sp. Bp7471, Burkholderia sp. Bp7483, Burkholderia sp. Bp7485, Burkholderia sp. Bp7491, Burkholderia sp. Bp7519, Burkholderia sp. Bp7520, Burkholderia sp. Bp7521, Burkholderia sp. Bp7554, Burkholderia sp. Bp7555, Burkholderia sp. Bp7571, Burkholderia sp. Bp7572, Burkholderia sp. Bp7635, Burkholderia sp. Bp7636, Burkholderia sp. Bp7639, Burkholderia sp. Bp7640, Burkholderia sp. Bp7641, Burkholderia sp. Bp7642, Burkholderia sp. Bp7643, Burkholderia sp. Bp7644, Burkholderia sp. Bp7645, Burkholderia sp. Bp7651, Burkholderia sp. Bp7656, Burkholderia sp. Bp7657, Burkholderia sp. Bp7658, Burkholderia sp. Bp7663, Burkholderia sp. Bp7665, Burkholderia sp. Bp7666, Burkholderia sp. Bp7667, Burkholderia sp. Bp7670, Burkholderia sp. Bp7671, Burkholderia sp. Bp7673, Burkholderia sp. Bp7681, Burkholderia sp. Bp7682, Burkholderia sp. Bp7684, Burkholderia sp. Bp7685, Burkholderia sp. Bp7686, Burkholderia sp. Bp7687, Burkholderia sp. Bp7690, Burkholderia sp. Bp7692, Burkholderia sp. Bp7693, Burkholderia sp. Bp7694, Burkholderia sp. Bp7697, Burkholderia sp. Bp7698, Burkholderia sp. Bp7699, Burkholderia sp. Bp7705, Burkholderia sp. Bp7707, Burkholderia sp. LMG 28156, Burkholderia sp. LMG 28157, Burkholderia sp. R-52095, Burkholderia sp. R-52096, Burkholderia sp. R-52235, Burkholderia sp. R-52237, Burkholderia sp. R-52238, Burkholderia sp. R-52240, Burkholderia stagnalis De Smet et al. 2015, CCUG 65686, LMG 28156, LMG:28156

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOK52297.1	AOK52479.1	WT74_05960	WT74_07020	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
AOK52297.1	AOK52804.1	WT74_05960	WT74_08945	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.809
AOK52297.1	AOK53428.1	WT74_05960	WT74_12420	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	dGTP triphosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.676
AOK52297.1	AOK54019.1	WT74_05960	WT74_15680	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.699
AOK52297.1	AOK54198.1	WT74_05960	WT74_16660	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858
AOK52297.1	AOK54991.1	WT74_05960	WT74_19570	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.656
AOK52297.1	AOK54992.1	WT74_05960	WT74_19575	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957
AOK52297.1	AOK55006.1	WT74_05960	WT74_19660	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.555
AOK52297.1	AOK55035.1	WT74_05960	WT74_19825	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.805
AOK52297.1	AOK55053.1	WT74_05960	WT74_19950	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
AOK52297.1	AOK55187.1	WT74_05960	WT74_19485	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.742
AOK52297.1	AOK55483.1	WT74_05960	WT74_21940	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.742
AOK52297.1	AOK55682.1	WT74_05960	WT74_23140	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.602
AOK52297.1	AOK55958.1	WT74_05960	WT74_24710	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
AOK52297.1	AOK56302.1	WT74_05960	WT74_26675	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
AOK52297.1	AOK56414.1	WT74_05960	WT74_27365	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deoxyuridine 5'-triphosphate nucleotidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
AOK52297.1	AOK57367.1	WT74_05960	WT74_32820	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
AOK52297.1	AOK57381.1	WT74_05960	WT74_32900	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
AOK52297.1	WT74_19535	WT74_05960	WT74_19535	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
AOK52479.1	AOK52297.1	WT74_07020	WT74_05960	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507

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