(16 nodes) Two-component regulatory system, and Signal transduction histidine kinase, CHASE2 sensor domain-containing, predicted network (Burkholderia stagnalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	phoB	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	phoR	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (439 aa)
	AOK52630.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (771 aa)
	AOK54352.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
	AOK54650.1	Histidine kinase; Member of a two-component regulatory system. (468 aa)
	AOK54651.1	Response regulator in two-component regulatory system with CusS; regulates the copper efflux system; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	AOK55163.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (363 aa)
	AOK54789.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
	AOK55759.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
	AOK55907.1	Histidine kinase; Member of a two-component regulatory system. (464 aa)
	AOK55908.1	Response regulator in two-component regulatory system with CusS; regulates the copper efflux system; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
	AOK56167.1	Histidine kinase; Member of a two-component regulatory system. (480 aa)
	AOK56168.1	Response regulator in two-component regulatory system with CusS; regulates the copper efflux system; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
	AOK56855.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)
	AOK56856.1	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)
	AOK57158.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)

Your Current Organism:

Burkholderia stagnalis

NCBI taxonomy Id: 1503054
Other names: B. stagnalis, Burkholderia sp. Bp6893, Burkholderia sp. Bp6916, Burkholderia sp. Bp7118, Burkholderia sp. Bp7119, Burkholderia sp. Bp7120, Burkholderia sp. Bp7137, Burkholderia sp. Bp7139, Burkholderia sp. Bp7142, Burkholderia sp. Bp7143, Burkholderia sp. Bp7145, Burkholderia sp. Bp7260, Burkholderia sp. Bp7266, Burkholderia sp. Bp7278, Burkholderia sp. Bp7280, Burkholderia sp. Bp7282, Burkholderia sp. Bp7288, Burkholderia sp. Bp7466, Burkholderia sp. Bp7469, Burkholderia sp. Bp7471, Burkholderia sp. Bp7483, Burkholderia sp. Bp7485, Burkholderia sp. Bp7491, Burkholderia sp. Bp7519, Burkholderia sp. Bp7520, Burkholderia sp. Bp7521, Burkholderia sp. Bp7554, Burkholderia sp. Bp7555, Burkholderia sp. Bp7571, Burkholderia sp. Bp7572, Burkholderia sp. Bp7635, Burkholderia sp. Bp7636, Burkholderia sp. Bp7639, Burkholderia sp. Bp7640, Burkholderia sp. Bp7641, Burkholderia sp. Bp7642, Burkholderia sp. Bp7643, Burkholderia sp. Bp7644, Burkholderia sp. Bp7645, Burkholderia sp. Bp7651, Burkholderia sp. Bp7656, Burkholderia sp. Bp7657, Burkholderia sp. Bp7658, Burkholderia sp. Bp7663, Burkholderia sp. Bp7665, Burkholderia sp. Bp7666, Burkholderia sp. Bp7667, Burkholderia sp. Bp7670, Burkholderia sp. Bp7671, Burkholderia sp. Bp7673, Burkholderia sp. Bp7681, Burkholderia sp. Bp7682, Burkholderia sp. Bp7684, Burkholderia sp. Bp7685, Burkholderia sp. Bp7686, Burkholderia sp. Bp7687, Burkholderia sp. Bp7690, Burkholderia sp. Bp7692, Burkholderia sp. Bp7693, Burkholderia sp. Bp7694, Burkholderia sp. Bp7697, Burkholderia sp. Bp7698, Burkholderia sp. Bp7699, Burkholderia sp. Bp7705, Burkholderia sp. Bp7707, Burkholderia sp. LMG 28156, Burkholderia sp. LMG 28157, Burkholderia sp. R-52095, Burkholderia sp. R-52096, Burkholderia sp. R-52235, Burkholderia sp. R-52237, Burkholderia sp. R-52238, Burkholderia sp. R-52240, Burkholderia stagnalis De Smet et al. 2015, CCUG 65686, LMG 28156, LMG:28156

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOK52630.1	AOK54352.1	WT74_07905	WT74_07985	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.838
AOK52630.1	AOK54651.1	WT74_07905	WT74_17605	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Response regulator in two-component regulatory system with CusS; regulates the copper efflux system; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.794
AOK52630.1	AOK54789.1	WT74_07905	WT74_18380	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.832
AOK52630.1	AOK55759.1	WT74_07905	WT74_23605	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
AOK52630.1	AOK55908.1	WT74_07905	WT74_24435	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Response regulator in two-component regulatory system with CusS; regulates the copper efflux system; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.777
AOK52630.1	AOK56168.1	WT74_07905	WT74_25885	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Response regulator in two-component regulatory system with CusS; regulates the copper efflux system; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.792
AOK52630.1	AOK56856.1	WT74_07905	WT74_29875	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
AOK52630.1	AOK57158.1	WT74_07905	WT74_31610	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.844
AOK52630.1	phoB	WT74_07905	WT74_06705	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.806
AOK52630.1	phoR	WT74_07905	WT74_06710	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
AOK54352.1	AOK52630.1	WT74_07985	WT74_07905	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.838
AOK54352.1	AOK54650.1	WT74_07985	WT74_17600	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Member of a two-component regulatory system.	0.789
AOK54352.1	AOK55163.1	WT74_07985	WT74_18375	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
AOK54352.1	AOK55759.1	WT74_07985	WT74_23605	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.545
AOK54352.1	AOK55907.1	WT74_07985	WT74_24430	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Member of a two-component regulatory system.	0.802
AOK54352.1	AOK56167.1	WT74_07985	WT74_25880	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Member of a two-component regulatory system.	0.734
AOK54352.1	AOK56855.1	WT74_07985	WT74_29870	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.750
AOK54352.1	phoR	WT74_07985	WT74_06710	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.734
AOK54650.1	AOK54352.1	WT74_17600	WT74_07985	Histidine kinase; Member of a two-component regulatory system.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.789
AOK54650.1	AOK54651.1	WT74_17600	WT74_17605	Histidine kinase; Member of a two-component regulatory system.	Response regulator in two-component regulatory system with CusS; regulates the copper efflux system; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996

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