(37 nodes) Transcription regulator LuxR, C-terminal, and Histidine kinase network (Burkholderia stagnalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOK51303.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
	AOK51964.1	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)
	AOK51965.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
	AOK54274.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	AOK54275.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (197 aa)
	AOK53020.1	Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)
	AOK54431.1	Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (175 aa)
	AOK54095.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
	AOK54096.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
	AOK54527.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
	AOK54529.1	Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
	AOK55064.1	N-acylhomoserine lactone synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)
	AOK55075.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
	AOK55123.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa)
	AOK55384.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
	AOK55402.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
	AOK55425.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	AOK57422.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (587 aa)
	AOK55513.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
	AOK55848.1	Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (929 aa)
	AOK56222.1	Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
	AOK56223.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (135 aa)
	AOK56232.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
	AOK56233.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (689 aa)
	AOK56381.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (663 aa)
	AOK56382.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
	AOK56527.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (62 aa)
	AOK56528.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)
	AOK56529.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (357 aa)
	AOK56530.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
	AOK56647.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
	AOK56649.1	Acyl-homoserine-lactone synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (202 aa)
	AOK56743.1	Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
	AOK56794.1	Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
	AOK57221.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
	AOK57368.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (460 aa)
	AOK57369.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)

Your Current Organism:

Burkholderia stagnalis

NCBI taxonomy Id: 1503054
Other names: B. stagnalis, Burkholderia sp. Bp6893, Burkholderia sp. Bp6916, Burkholderia sp. Bp7118, Burkholderia sp. Bp7119, Burkholderia sp. Bp7120, Burkholderia sp. Bp7137, Burkholderia sp. Bp7139, Burkholderia sp. Bp7142, Burkholderia sp. Bp7143, Burkholderia sp. Bp7145, Burkholderia sp. Bp7260, Burkholderia sp. Bp7266, Burkholderia sp. Bp7278, Burkholderia sp. Bp7280, Burkholderia sp. Bp7282, Burkholderia sp. Bp7288, Burkholderia sp. Bp7466, Burkholderia sp. Bp7469, Burkholderia sp. Bp7471, Burkholderia sp. Bp7483, Burkholderia sp. Bp7485, Burkholderia sp. Bp7491, Burkholderia sp. Bp7519, Burkholderia sp. Bp7520, Burkholderia sp. Bp7521, Burkholderia sp. Bp7554, Burkholderia sp. Bp7555, Burkholderia sp. Bp7571, Burkholderia sp. Bp7572, Burkholderia sp. Bp7635, Burkholderia sp. Bp7636, Burkholderia sp. Bp7639, Burkholderia sp. Bp7640, Burkholderia sp. Bp7641, Burkholderia sp. Bp7642, Burkholderia sp. Bp7643, Burkholderia sp. Bp7644, Burkholderia sp. Bp7645, Burkholderia sp. Bp7651, Burkholderia sp. Bp7656, Burkholderia sp. Bp7657, Burkholderia sp. Bp7658, Burkholderia sp. Bp7663, Burkholderia sp. Bp7665, Burkholderia sp. Bp7666, Burkholderia sp. Bp7667, Burkholderia sp. Bp7670, Burkholderia sp. Bp7671, Burkholderia sp. Bp7673, Burkholderia sp. Bp7681, Burkholderia sp. Bp7682, Burkholderia sp. Bp7684, Burkholderia sp. Bp7685, Burkholderia sp. Bp7686, Burkholderia sp. Bp7687, Burkholderia sp. Bp7690, Burkholderia sp. Bp7692, Burkholderia sp. Bp7693, Burkholderia sp. Bp7694, Burkholderia sp. Bp7697, Burkholderia sp. Bp7698, Burkholderia sp. Bp7699, Burkholderia sp. Bp7705, Burkholderia sp. Bp7707, Burkholderia sp. LMG 28156, Burkholderia sp. LMG 28157, Burkholderia sp. R-52095, Burkholderia sp. R-52096, Burkholderia sp. R-52235, Burkholderia sp. R-52237, Burkholderia sp. R-52238, Burkholderia sp. R-52240, Burkholderia stagnalis De Smet et al. 2015, CCUG 65686, LMG 28156, LMG:28156

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOK51303.1	AOK54095.1	WT74_00320	WT74_16095	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
AOK51303.1	AOK56223.1	WT74_00320	WT74_26200	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.606
AOK51303.1	AOK56233.1	WT74_00320	WT74_26265	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
AOK51303.1	AOK56381.1	WT74_00320	WT74_27140	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
AOK51303.1	AOK56794.1	WT74_00320	WT74_29510	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
AOK51303.1	AOK57368.1	WT74_00320	WT74_32825	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762
AOK51303.1	AOK57422.1	WT74_00320	WT74_22110	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.852
AOK51964.1	AOK51965.1	WT74_04050	WT74_04055	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
AOK51964.1	AOK54275.1	WT74_04050	WT74_04065	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.416
AOK51965.1	AOK51964.1	WT74_04055	WT74_04050	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
AOK51965.1	AOK54274.1	WT74_04055	WT74_04060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.467
AOK51965.1	AOK54275.1	WT74_04055	WT74_04065	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.494
AOK53020.1	AOK54095.1	WT74_10130	WT74_16095	Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
AOK53020.1	AOK55848.1	WT74_10130	WT74_24080	Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
AOK53020.1	AOK56233.1	WT74_10130	WT74_26265	Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.523
AOK53020.1	AOK56381.1	WT74_10130	WT74_27140	Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.522
AOK53020.1	AOK57422.1	WT74_10130	WT74_22110	Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.472
AOK54095.1	AOK51303.1	WT74_16095	WT74_00320	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
AOK54095.1	AOK53020.1	WT74_16095	WT74_10130	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
AOK54095.1	AOK54096.1	WT74_16095	WT74_16100	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966

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