(15 nodes) Histidine kinase, and Transcription regulator LuxR, C-terminal network (Burkholderia stagnalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOK51303.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
	AOK54095.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
	AOK54096.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
	AOK55384.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
	AOK57422.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (587 aa)
	AOK55513.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
	AOK56232.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
	AOK56233.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (689 aa)
	AOK56381.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (663 aa)
	AOK56382.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
	AOK56743.1	Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
	AOK56794.1	Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
	AOK57221.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
	AOK57368.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (460 aa)
	AOK57369.1	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)

Your Current Organism:

Burkholderia stagnalis

NCBI taxonomy Id: 1503054
Other names: B. stagnalis, Burkholderia sp. Bp6893, Burkholderia sp. Bp6916, Burkholderia sp. Bp7118, Burkholderia sp. Bp7119, Burkholderia sp. Bp7120, Burkholderia sp. Bp7137, Burkholderia sp. Bp7139, Burkholderia sp. Bp7142, Burkholderia sp. Bp7143, Burkholderia sp. Bp7145, Burkholderia sp. Bp7260, Burkholderia sp. Bp7266, Burkholderia sp. Bp7278, Burkholderia sp. Bp7280, Burkholderia sp. Bp7282, Burkholderia sp. Bp7288, Burkholderia sp. Bp7466, Burkholderia sp. Bp7469, Burkholderia sp. Bp7471, Burkholderia sp. Bp7483, Burkholderia sp. Bp7485, Burkholderia sp. Bp7491, Burkholderia sp. Bp7519, Burkholderia sp. Bp7520, Burkholderia sp. Bp7521, Burkholderia sp. Bp7554, Burkholderia sp. Bp7555, Burkholderia sp. Bp7571, Burkholderia sp. Bp7572, Burkholderia sp. Bp7635, Burkholderia sp. Bp7636, Burkholderia sp. Bp7639, Burkholderia sp. Bp7640, Burkholderia sp. Bp7641, Burkholderia sp. Bp7642, Burkholderia sp. Bp7643, Burkholderia sp. Bp7644, Burkholderia sp. Bp7645, Burkholderia sp. Bp7651, Burkholderia sp. Bp7656, Burkholderia sp. Bp7657, Burkholderia sp. Bp7658, Burkholderia sp. Bp7663, Burkholderia sp. Bp7665, Burkholderia sp. Bp7666, Burkholderia sp. Bp7667, Burkholderia sp. Bp7670, Burkholderia sp. Bp7671, Burkholderia sp. Bp7673, Burkholderia sp. Bp7681, Burkholderia sp. Bp7682, Burkholderia sp. Bp7684, Burkholderia sp. Bp7685, Burkholderia sp. Bp7686, Burkholderia sp. Bp7687, Burkholderia sp. Bp7690, Burkholderia sp. Bp7692, Burkholderia sp. Bp7693, Burkholderia sp. Bp7694, Burkholderia sp. Bp7697, Burkholderia sp. Bp7698, Burkholderia sp. Bp7699, Burkholderia sp. Bp7705, Burkholderia sp. Bp7707, Burkholderia sp. LMG 28156, Burkholderia sp. LMG 28157, Burkholderia sp. R-52095, Burkholderia sp. R-52096, Burkholderia sp. R-52235, Burkholderia sp. R-52237, Burkholderia sp. R-52238, Burkholderia sp. R-52240, Burkholderia stagnalis De Smet et al. 2015, CCUG 65686, LMG 28156, LMG:28156

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOK51303.1	AOK54095.1	WT74_00320	WT74_16095	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
AOK51303.1	AOK56233.1	WT74_00320	WT74_26265	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
AOK51303.1	AOK56381.1	WT74_00320	WT74_27140	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
AOK51303.1	AOK56794.1	WT74_00320	WT74_29510	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
AOK51303.1	AOK57368.1	WT74_00320	WT74_32825	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762
AOK51303.1	AOK57422.1	WT74_00320	WT74_22110	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.852
AOK54095.1	AOK51303.1	WT74_16095	WT74_00320	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.853
AOK54095.1	AOK54096.1	WT74_16095	WT74_16100	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
AOK54095.1	AOK55384.1	WT74_16095	WT74_21375	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
AOK54095.1	AOK55513.1	WT74_16095	WT74_22115	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
AOK54095.1	AOK56232.1	WT74_16095	WT74_26260	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
AOK54095.1	AOK56382.1	WT74_16095	WT74_27145	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
AOK54095.1	AOK56743.1	WT74_16095	WT74_29220	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
AOK54095.1	AOK56794.1	WT74_16095	WT74_29510	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.840
AOK54095.1	AOK57221.1	WT74_16095	WT74_31965	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
AOK54095.1	AOK57369.1	WT74_16095	WT74_32830	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.857
AOK54096.1	AOK54095.1	WT74_16100	WT74_16095	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
AOK54096.1	AOK55513.1	WT74_16100	WT74_22115	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AOK54096.1	AOK56233.1	WT74_16100	WT74_26265	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.868
AOK54096.1	AOK56381.1	WT74_16100	WT74_27140	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869

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