STRINGSTRING
AOK51375.1 AOK51375.1 AOK51387.1 AOK51387.1 AOK51389.1 AOK51389.1 AOK51484.1 AOK51484.1 dapB dapB AOK51818.1 AOK51818.1 dusB dusB AOK51949.1 AOK51949.1 AOK52043.1 AOK52043.1 AOK52104.1 AOK52104.1 AOK52161.1 AOK52161.1 AOK52178.1 AOK52178.1 AOK52370.1 AOK52370.1 pyrD pyrD dusA dusA AOK52755.1 AOK52755.1 AOK52832.1 AOK52832.1 AOK52833.1 AOK52833.1 AOK52834.1 AOK52834.1 AOK52982.1 AOK52982.1 AOK53223.1 AOK53223.1 AOK53310.1 AOK53310.1 AOK53311.1 AOK53311.1 hemF hemF AOK53795.1 AOK53795.1 AOK53937.1 AOK53937.1 AOK53938.1 AOK53938.1 AOK54552.1 AOK54552.1 AOK54566.1 AOK54566.1 AOK55148.1 AOK55148.1 AOK54621.1 AOK54621.1 AOK54622.1 AOK54622.1 AOK54686.1 AOK54686.1 AOK54704.1 AOK54704.1 AOK55168.1 AOK55168.1 AOK54845.1 AOK54845.1 AOK55172.1 AOK55172.1 AOK54868.1 AOK54868.1 AOK54974.1 AOK54974.1 AOK55016.1 AOK55016.1 AOK55108.1 AOK55108.1 AOK55111.1 AOK55111.1 AOK55269.1 AOK55269.1 AOK55420.1 AOK55420.1 AOK57455.1 AOK57455.1 AOK55798.1 AOK55798.1 AOK55833.1 AOK55833.1 sdhD sdhD AOK55835.1 AOK55835.1 sdhB sdhB AOK55854.1 AOK55854.1 AOK57476.1 AOK57476.1 AOK56091.1 AOK56091.1 AOK57508.1 AOK57508.1 AOK57526.1 AOK57526.1 AOK56363.1 AOK56363.1 AOK56726.1 AOK56726.1 AOK56870.1 AOK56870.1 AOK57063.1 AOK57063.1 AOK57138.1 AOK57138.1 AOK57180.1 AOK57180.1 fabV fabV
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AOK51375.1DNA alkylation response protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (550 aa)
AOK51387.1Pyridoxamine 5'-phosphate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
AOK51389.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)
AOK51484.1Pyridoxamine 5'-phosphate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
dapB4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. (265 aa)
AOK51818.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)
dusBtRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. (356 aa)
AOK51949.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa)
AOK52043.1Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (461 aa)
AOK52104.1Coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. (404 aa)
AOK52161.1Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
AOK52178.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (596 aa)
AOK52370.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (420 aa)
pyrDDihydroorotate dehydrogenase 2; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. (345 aa)
dusAtRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. (323 aa)
AOK52755.1cobalt-precorrin-6A reductase; CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
AOK52832.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
AOK52833.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
AOK52834.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
AOK52982.12-alkenal reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)
AOK53223.1DNA alkylation response protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (585 aa)
AOK53310.1pimeloyl-CoA dehydrogenase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)
AOK53311.1pimeloyl-CoA dehydrogenase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
hemFCoproporphyrinogen III oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX. (307 aa)
AOK53795.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (595 aa)
AOK53937.1pimeloyl-CoA dehydrogenase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (380 aa)
AOK53938.1pimeloyl-CoA dehydrogenase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (402 aa)
AOK54552.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (596 aa)
AOK54566.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)
AOK55148.1Dihydropyrimidine dehydrogenase subunit B; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology. (435 aa)
AOK54621.1SfnB family sulfur acquisition oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)
AOK54622.1SfnB family sulfur acquisition oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)
AOK54686.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
AOK54704.1Catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; Derived by automated computational analysis using gene prediction method: Protein Homology. (469 aa)
AOK55168.1SfnB family sulfur acquisition oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)
AOK54845.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (405 aa)
AOK55172.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
AOK54868.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (511 aa)
AOK54974.1NAD(P)-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
AOK55016.1NADP-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
AOK55108.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)
AOK55111.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
AOK55269.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (359 aa)
AOK55420.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
AOK57455.1NADP-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
AOK55798.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (611 aa)
AOK55833.1Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)
sdhDSuccinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)
AOK55835.1Part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (591 aa)
sdhBPart of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
AOK55854.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)
AOK57476.1NADP-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
AOK56091.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
AOK57508.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (420 aa)
AOK57526.1enoyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
AOK56363.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
AOK56726.1Dihydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
AOK56870.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
AOK57063.1isovaleryl-CoA dehydrogenase; Catalyzes the formation of 3-methylbut-2-enoyl CoA from 3-methylbutanoyl CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (393 aa)
AOK57138.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (403 aa)
AOK57180.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (133 aa)
fabVtrans-2-enoyl-CoA reductase; Involved in the final reduction of the elongation cycle of fatty acid synthesis (FAS II). Catalyzes the reduction of a carbon- carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP); Belongs to the TER reductase family. (400 aa)
Your Current Organism:
Burkholderia stagnalis
NCBI taxonomy Id: 1503054
Other names: B. stagnalis, Burkholderia sp. Bp6893, Burkholderia sp. Bp6916, Burkholderia sp. Bp7118, Burkholderia sp. Bp7119, Burkholderia sp. Bp7120, Burkholderia sp. Bp7137, Burkholderia sp. Bp7139, Burkholderia sp. Bp7142, Burkholderia sp. Bp7143, Burkholderia sp. Bp7145, Burkholderia sp. Bp7260, Burkholderia sp. Bp7266, Burkholderia sp. Bp7278, Burkholderia sp. Bp7280, Burkholderia sp. Bp7282, Burkholderia sp. Bp7288, Burkholderia sp. Bp7466, Burkholderia sp. Bp7469, Burkholderia sp. Bp7471, Burkholderia sp. Bp7483, Burkholderia sp. Bp7485, Burkholderia sp. Bp7491, Burkholderia sp. Bp7519, Burkholderia sp. Bp7520, Burkholderia sp. Bp7521, Burkholderia sp. Bp7554, Burkholderia sp. Bp7555, Burkholderia sp. Bp7571, Burkholderia sp. Bp7572, Burkholderia sp. Bp7635, Burkholderia sp. Bp7636, Burkholderia sp. Bp7639, Burkholderia sp. Bp7640, Burkholderia sp. Bp7641, Burkholderia sp. Bp7642, Burkholderia sp. Bp7643, Burkholderia sp. Bp7644, Burkholderia sp. Bp7645, Burkholderia sp. Bp7651, Burkholderia sp. Bp7656, Burkholderia sp. Bp7657, Burkholderia sp. Bp7658, Burkholderia sp. Bp7663, Burkholderia sp. Bp7665, Burkholderia sp. Bp7666, Burkholderia sp. Bp7667, Burkholderia sp. Bp7670, Burkholderia sp. Bp7671, Burkholderia sp. Bp7673, Burkholderia sp. Bp7681, Burkholderia sp. Bp7682, Burkholderia sp. Bp7684, Burkholderia sp. Bp7685, Burkholderia sp. Bp7686, Burkholderia sp. Bp7687, Burkholderia sp. Bp7690, Burkholderia sp. Bp7692, Burkholderia sp. Bp7693, Burkholderia sp. Bp7694, Burkholderia sp. Bp7697, Burkholderia sp. Bp7698, Burkholderia sp. Bp7699, Burkholderia sp. Bp7705, Burkholderia sp. Bp7707, Burkholderia sp. LMG 28156, Burkholderia sp. LMG 28157, Burkholderia sp. R-52095, Burkholderia sp. R-52096, Burkholderia sp. R-52235, Burkholderia sp. R-52237, Burkholderia sp. R-52238, Burkholderia sp. R-52240, Burkholderia stagnalis De Smet et al. 2015, CCUG 65686, LMG 28156, LMG:28156
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