(7 nodes) PAS-associated, C-terminal network (Burkholderia stagnalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOK53204.1	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (838 aa)
	WT74_19535	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (527 aa)
	AOK54991.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (850 aa)
	AOK55312.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (532 aa)
	AOK56233.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (689 aa)
	AOK56302.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (848 aa)
	AOK56381.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (663 aa)

Your Current Organism:

Burkholderia stagnalis

NCBI taxonomy Id: 1503054
Other names: B. stagnalis, Burkholderia sp. Bp6893, Burkholderia sp. Bp6916, Burkholderia sp. Bp7118, Burkholderia sp. Bp7119, Burkholderia sp. Bp7120, Burkholderia sp. Bp7137, Burkholderia sp. Bp7139, Burkholderia sp. Bp7142, Burkholderia sp. Bp7143, Burkholderia sp. Bp7145, Burkholderia sp. Bp7260, Burkholderia sp. Bp7266, Burkholderia sp. Bp7278, Burkholderia sp. Bp7280, Burkholderia sp. Bp7282, Burkholderia sp. Bp7288, Burkholderia sp. Bp7466, Burkholderia sp. Bp7469, Burkholderia sp. Bp7471, Burkholderia sp. Bp7483, Burkholderia sp. Bp7485, Burkholderia sp. Bp7491, Burkholderia sp. Bp7519, Burkholderia sp. Bp7520, Burkholderia sp. Bp7521, Burkholderia sp. Bp7554, Burkholderia sp. Bp7555, Burkholderia sp. Bp7571, Burkholderia sp. Bp7572, Burkholderia sp. Bp7635, Burkholderia sp. Bp7636, Burkholderia sp. Bp7639, Burkholderia sp. Bp7640, Burkholderia sp. Bp7641, Burkholderia sp. Bp7642, Burkholderia sp. Bp7643, Burkholderia sp. Bp7644, Burkholderia sp. Bp7645, Burkholderia sp. Bp7651, Burkholderia sp. Bp7656, Burkholderia sp. Bp7657, Burkholderia sp. Bp7658, Burkholderia sp. Bp7663, Burkholderia sp. Bp7665, Burkholderia sp. Bp7666, Burkholderia sp. Bp7667, Burkholderia sp. Bp7670, Burkholderia sp. Bp7671, Burkholderia sp. Bp7673, Burkholderia sp. Bp7681, Burkholderia sp. Bp7682, Burkholderia sp. Bp7684, Burkholderia sp. Bp7685, Burkholderia sp. Bp7686, Burkholderia sp. Bp7687, Burkholderia sp. Bp7690, Burkholderia sp. Bp7692, Burkholderia sp. Bp7693, Burkholderia sp. Bp7694, Burkholderia sp. Bp7697, Burkholderia sp. Bp7698, Burkholderia sp. Bp7699, Burkholderia sp. Bp7705, Burkholderia sp. Bp7707, Burkholderia sp. LMG 28156, Burkholderia sp. LMG 28157, Burkholderia sp. R-52095, Burkholderia sp. R-52096, Burkholderia sp. R-52235, Burkholderia sp. R-52237, Burkholderia sp. R-52238, Burkholderia sp. R-52240, Burkholderia stagnalis De Smet et al. 2015, CCUG 65686, LMG 28156, LMG:28156

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOK53204.1	AOK54991.1	WT74_11170	WT74_19570	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.734
AOK53204.1	AOK56302.1	WT74_11170	WT74_26675	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.586
AOK53204.1	WT74_19535	WT74_11170	WT74_19535	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
AOK54991.1	AOK53204.1	WT74_19570	WT74_11170	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.734
AOK54991.1	AOK56233.1	WT74_19570	WT74_26265	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
AOK54991.1	AOK56302.1	WT74_19570	WT74_26675	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.731
AOK54991.1	AOK56381.1	WT74_19570	WT74_27140	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
AOK54991.1	WT74_19535	WT74_19570	WT74_19535	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
AOK55312.1	WT74_19535	WT74_20985	WT74_19535	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
AOK56233.1	AOK54991.1	WT74_26265	WT74_19570	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
AOK56233.1	AOK56302.1	WT74_26265	WT74_26675	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.599
AOK56233.1	WT74_19535	WT74_26265	WT74_19535	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
AOK56302.1	AOK53204.1	WT74_26675	WT74_11170	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.586
AOK56302.1	AOK54991.1	WT74_26675	WT74_19570	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.731
AOK56302.1	AOK56233.1	WT74_26675	WT74_26265	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.599
AOK56302.1	AOK56381.1	WT74_26675	WT74_27140	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.599
AOK56302.1	WT74_19535	WT74_26675	WT74_19535	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.864
AOK56381.1	AOK54991.1	WT74_27140	WT74_19570	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
AOK56381.1	AOK56302.1	WT74_27140	WT74_26675	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.599
AOK56381.1	WT74_19535	WT74_27140	WT74_19535	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923

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