(24 nodes) PAS domain superfamily network (Burkholderia stagnalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOK53211.1	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (380 aa)
	AOK54431.1	Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (175 aa)
	AOK56381.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (663 aa)
	AOK57126.1	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	AOK57269.1	Propionate catabolism operon regulatory protein PrpR; Derived by automated computational analysis using gene prediction method: Protein Homology. (660 aa)
	AOK57276.1	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (490 aa)
	AOK57378.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	AOK56291.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (512 aa)
	AOK56233.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (689 aa)
	AOK55958.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (750 aa)
	AOK55483.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (897 aa)
	AOK55480.1	RNase II stability modulator; c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; Derived by automated computational analysis using gene prediction method: Protein Homology. (667 aa)
	AOK52297.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (611 aa)
	AOK55312.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (532 aa)
	AOK54991.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (850 aa)
	AOK56302.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (848 aa)
	WT74_19535	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (527 aa)
	AOK55187.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (761 aa)
	AOK54162.1	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (807 aa)
	phoR	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (439 aa)
	AOK52523.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (795 aa)
	AOK52551.1	Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (181 aa)
	AOK52849.1	Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (456 aa)
	AOK53204.1	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (838 aa)

Your Current Organism:

Burkholderia stagnalis

NCBI taxonomy Id: 1503054
Other names: B. stagnalis, Burkholderia sp. Bp6893, Burkholderia sp. Bp6916, Burkholderia sp. Bp7118, Burkholderia sp. Bp7119, Burkholderia sp. Bp7120, Burkholderia sp. Bp7137, Burkholderia sp. Bp7139, Burkholderia sp. Bp7142, Burkholderia sp. Bp7143, Burkholderia sp. Bp7145, Burkholderia sp. Bp7260, Burkholderia sp. Bp7266, Burkholderia sp. Bp7278, Burkholderia sp. Bp7280, Burkholderia sp. Bp7282, Burkholderia sp. Bp7288, Burkholderia sp. Bp7466, Burkholderia sp. Bp7469, Burkholderia sp. Bp7471, Burkholderia sp. Bp7483, Burkholderia sp. Bp7485, Burkholderia sp. Bp7491, Burkholderia sp. Bp7519, Burkholderia sp. Bp7520, Burkholderia sp. Bp7521, Burkholderia sp. Bp7554, Burkholderia sp. Bp7555, Burkholderia sp. Bp7571, Burkholderia sp. Bp7572, Burkholderia sp. Bp7635, Burkholderia sp. Bp7636, Burkholderia sp. Bp7639, Burkholderia sp. Bp7640, Burkholderia sp. Bp7641, Burkholderia sp. Bp7642, Burkholderia sp. Bp7643, Burkholderia sp. Bp7644, Burkholderia sp. Bp7645, Burkholderia sp. Bp7651, Burkholderia sp. Bp7656, Burkholderia sp. Bp7657, Burkholderia sp. Bp7658, Burkholderia sp. Bp7663, Burkholderia sp. Bp7665, Burkholderia sp. Bp7666, Burkholderia sp. Bp7667, Burkholderia sp. Bp7670, Burkholderia sp. Bp7671, Burkholderia sp. Bp7673, Burkholderia sp. Bp7681, Burkholderia sp. Bp7682, Burkholderia sp. Bp7684, Burkholderia sp. Bp7685, Burkholderia sp. Bp7686, Burkholderia sp. Bp7687, Burkholderia sp. Bp7690, Burkholderia sp. Bp7692, Burkholderia sp. Bp7693, Burkholderia sp. Bp7694, Burkholderia sp. Bp7697, Burkholderia sp. Bp7698, Burkholderia sp. Bp7699, Burkholderia sp. Bp7705, Burkholderia sp. Bp7707, Burkholderia sp. LMG 28156, Burkholderia sp. LMG 28157, Burkholderia sp. R-52095, Burkholderia sp. R-52096, Burkholderia sp. R-52235, Burkholderia sp. R-52237, Burkholderia sp. R-52238, Burkholderia sp. R-52240, Burkholderia stagnalis De Smet et al. 2015, CCUG 65686, LMG 28156, LMG:28156

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOK52297.1	AOK53204.1	WT74_05960	WT74_11170	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.477
AOK52297.1	AOK54991.1	WT74_05960	WT74_19570	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.656
AOK52297.1	AOK55187.1	WT74_05960	WT74_19485	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.742
AOK52297.1	AOK55480.1	WT74_05960	WT74_21925	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNase II stability modulator; c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.559
AOK52297.1	AOK55483.1	WT74_05960	WT74_21940	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.742
AOK52297.1	AOK55958.1	WT74_05960	WT74_24710	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
AOK52297.1	AOK56291.1	WT74_05960	WT74_26605	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.512
AOK52297.1	AOK56302.1	WT74_05960	WT74_26675	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
AOK52297.1	AOK57378.1	WT74_05960	WT74_32885	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.510
AOK52297.1	WT74_19535	WT74_05960	WT74_19535	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
AOK52523.1	AOK53204.1	WT74_07255	WT74_11170	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.443
AOK52523.1	AOK54991.1	WT74_07255	WT74_19570	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.452
AOK52523.1	AOK55187.1	WT74_07255	WT74_19485	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.587
AOK52523.1	AOK55483.1	WT74_07255	WT74_21940	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.536
AOK52523.1	AOK56302.1	WT74_07255	WT74_26675	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.420
AOK52523.1	WT74_19535	WT74_07255	WT74_19535	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
AOK52551.1	AOK53204.1	WT74_07400	WT74_11170	Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.547
AOK52551.1	AOK55187.1	WT74_07400	WT74_19485	Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.470
AOK52551.1	AOK55483.1	WT74_07400	WT74_21940	Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.470
AOK52551.1	WT74_19535	WT74_07400	WT74_19535	Helix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.470

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