(22 nodes) Sugar (and other) transporter network (Burkholderia stagnalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOK52102.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)
	AOK51293.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)
	AOK54265.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)
	AOK51955.1	4-hydroxybenzoate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (451 aa)
	AOK52070.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (405 aa)
	WT74_06145	Multidrug DMT transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
	AOK52406.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (497 aa)
	emrB-2	Multidrug resistance protein B; Multidrug MFS transporte; with EmrA is involved in resistance to hydrophobic antibiotics such as nalidixic acid; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily. (519 aa)
	AOK54340.1	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)
	AOK52791.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (384 aa)
	AOK53734.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (552 aa)
	AOK53737.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (193 aa)
	AOK54451.1	Arabinose transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)
	AOK54874.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
	AOK55319.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (490 aa)
	AOK55345.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (420 aa)
	AOK55433.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)
	AOK55478.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (433 aa)
	AOK55525.1	2-ketogluconate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (432 aa)
	AOK56185.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (421 aa)
	emrB-3	Multidrug resistance protein B; Multidrug MFS transporte; with EmrA is involved in resistance to hydrophobic antibiotics such as nalidixic acid; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily. (512 aa)
	AOK57240.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)

Your Current Organism:

Burkholderia stagnalis

NCBI taxonomy Id: 1503054
Other names: B. stagnalis, Burkholderia sp. Bp6893, Burkholderia sp. Bp6916, Burkholderia sp. Bp7118, Burkholderia sp. Bp7119, Burkholderia sp. Bp7120, Burkholderia sp. Bp7137, Burkholderia sp. Bp7139, Burkholderia sp. Bp7142, Burkholderia sp. Bp7143, Burkholderia sp. Bp7145, Burkholderia sp. Bp7260, Burkholderia sp. Bp7266, Burkholderia sp. Bp7278, Burkholderia sp. Bp7280, Burkholderia sp. Bp7282, Burkholderia sp. Bp7288, Burkholderia sp. Bp7466, Burkholderia sp. Bp7469, Burkholderia sp. Bp7471, Burkholderia sp. Bp7483, Burkholderia sp. Bp7485, Burkholderia sp. Bp7491, Burkholderia sp. Bp7519, Burkholderia sp. Bp7520, Burkholderia sp. Bp7521, Burkholderia sp. Bp7554, Burkholderia sp. Bp7555, Burkholderia sp. Bp7571, Burkholderia sp. Bp7572, Burkholderia sp. Bp7635, Burkholderia sp. Bp7636, Burkholderia sp. Bp7639, Burkholderia sp. Bp7640, Burkholderia sp. Bp7641, Burkholderia sp. Bp7642, Burkholderia sp. Bp7643, Burkholderia sp. Bp7644, Burkholderia sp. Bp7645, Burkholderia sp. Bp7651, Burkholderia sp. Bp7656, Burkholderia sp. Bp7657, Burkholderia sp. Bp7658, Burkholderia sp. Bp7663, Burkholderia sp. Bp7665, Burkholderia sp. Bp7666, Burkholderia sp. Bp7667, Burkholderia sp. Bp7670, Burkholderia sp. Bp7671, Burkholderia sp. Bp7673, Burkholderia sp. Bp7681, Burkholderia sp. Bp7682, Burkholderia sp. Bp7684, Burkholderia sp. Bp7685, Burkholderia sp. Bp7686, Burkholderia sp. Bp7687, Burkholderia sp. Bp7690, Burkholderia sp. Bp7692, Burkholderia sp. Bp7693, Burkholderia sp. Bp7694, Burkholderia sp. Bp7697, Burkholderia sp. Bp7698, Burkholderia sp. Bp7699, Burkholderia sp. Bp7705, Burkholderia sp. Bp7707, Burkholderia sp. LMG 28156, Burkholderia sp. LMG 28157, Burkholderia sp. R-52095, Burkholderia sp. R-52096, Burkholderia sp. R-52235, Burkholderia sp. R-52237, Burkholderia sp. R-52238, Burkholderia sp. R-52240, Burkholderia stagnalis De Smet et al. 2015, CCUG 65686, LMG 28156, LMG:28156

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOK51955.1	AOK55525.1	WT74_04005	WT74_22180	4-hydroxybenzoate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-ketogluconate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.422
AOK52070.1	AOK55319.1	WT74_04675	WT74_21020	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
AOK54874.1	AOK55319.1	WT74_18890	WT74_21020	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
AOK55319.1	AOK52070.1	WT74_21020	WT74_04675	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
AOK55319.1	AOK54874.1	WT74_21020	WT74_18890	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
AOK55319.1	AOK56185.1	WT74_21020	WT74_25980	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450
AOK55525.1	AOK51955.1	WT74_22180	WT74_04005	2-ketogluconate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxybenzoate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.422
AOK56185.1	AOK55319.1	WT74_25980	WT74_21020	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450

Server load: low (28%) [HD]

Permalink

Network

Cooccurrence

Textmining

Neighborhood

Experiments

Fusion

Databases

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About