(14 nodes) Putative diguanylate phosphodiesterase network (Burkholderia stagnalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AOK57058.1	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	AOK52297.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (611 aa)
	AOK52322.1	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)
	AOK53428.1	dGTP triphosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (779 aa)
	AOK54441.1	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (424 aa)
	AOK53993.1	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (430 aa)
	AOK54019.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (611 aa)
	AOK54759.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (770 aa)
	AOK54760.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (696 aa)
	AOK54991.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (850 aa)
	AOK55035.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
	AOK55480.1	RNase II stability modulator; c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; Derived by automated computational analysis using gene prediction method: Protein Homology. (667 aa)
	AOK55958.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (750 aa)
	AOK56302.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (848 aa)

Your Current Organism:

Burkholderia stagnalis

NCBI taxonomy Id: 1503054
Other names: B. stagnalis, Burkholderia sp. Bp6893, Burkholderia sp. Bp6916, Burkholderia sp. Bp7118, Burkholderia sp. Bp7119, Burkholderia sp. Bp7120, Burkholderia sp. Bp7137, Burkholderia sp. Bp7139, Burkholderia sp. Bp7142, Burkholderia sp. Bp7143, Burkholderia sp. Bp7145, Burkholderia sp. Bp7260, Burkholderia sp. Bp7266, Burkholderia sp. Bp7278, Burkholderia sp. Bp7280, Burkholderia sp. Bp7282, Burkholderia sp. Bp7288, Burkholderia sp. Bp7466, Burkholderia sp. Bp7469, Burkholderia sp. Bp7471, Burkholderia sp. Bp7483, Burkholderia sp. Bp7485, Burkholderia sp. Bp7491, Burkholderia sp. Bp7519, Burkholderia sp. Bp7520, Burkholderia sp. Bp7521, Burkholderia sp. Bp7554, Burkholderia sp. Bp7555, Burkholderia sp. Bp7571, Burkholderia sp. Bp7572, Burkholderia sp. Bp7635, Burkholderia sp. Bp7636, Burkholderia sp. Bp7639, Burkholderia sp. Bp7640, Burkholderia sp. Bp7641, Burkholderia sp. Bp7642, Burkholderia sp. Bp7643, Burkholderia sp. Bp7644, Burkholderia sp. Bp7645, Burkholderia sp. Bp7651, Burkholderia sp. Bp7656, Burkholderia sp. Bp7657, Burkholderia sp. Bp7658, Burkholderia sp. Bp7663, Burkholderia sp. Bp7665, Burkholderia sp. Bp7666, Burkholderia sp. Bp7667, Burkholderia sp. Bp7670, Burkholderia sp. Bp7671, Burkholderia sp. Bp7673, Burkholderia sp. Bp7681, Burkholderia sp. Bp7682, Burkholderia sp. Bp7684, Burkholderia sp. Bp7685, Burkholderia sp. Bp7686, Burkholderia sp. Bp7687, Burkholderia sp. Bp7690, Burkholderia sp. Bp7692, Burkholderia sp. Bp7693, Burkholderia sp. Bp7694, Burkholderia sp. Bp7697, Burkholderia sp. Bp7698, Burkholderia sp. Bp7699, Burkholderia sp. Bp7705, Burkholderia sp. Bp7707, Burkholderia sp. LMG 28156, Burkholderia sp. LMG 28157, Burkholderia sp. R-52095, Burkholderia sp. R-52096, Burkholderia sp. R-52235, Burkholderia sp. R-52237, Burkholderia sp. R-52238, Burkholderia sp. R-52240, Burkholderia stagnalis De Smet et al. 2015, CCUG 65686, LMG 28156, LMG:28156

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOK52297.1	AOK52322.1	WT74_05960	WT74_06090	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
AOK52297.1	AOK53428.1	WT74_05960	WT74_12420	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	dGTP triphosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.676
AOK52297.1	AOK53993.1	WT74_05960	WT74_15535	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
AOK52297.1	AOK54019.1	WT74_05960	WT74_15680	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.699
AOK52297.1	AOK54441.1	WT74_05960	WT74_13535	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.714
AOK52297.1	AOK54759.1	WT74_05960	WT74_18195	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.542
AOK52297.1	AOK54760.1	WT74_05960	WT74_18200	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.715
AOK52297.1	AOK54991.1	WT74_05960	WT74_19570	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.656
AOK52297.1	AOK55035.1	WT74_05960	WT74_19825	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.805
AOK52297.1	AOK55480.1	WT74_05960	WT74_21925	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNase II stability modulator; c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.559
AOK52297.1	AOK55958.1	WT74_05960	WT74_24710	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
AOK52297.1	AOK56302.1	WT74_05960	WT74_26675	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
AOK52297.1	AOK57058.1	WT74_05960	WT74_31015	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471
AOK52322.1	AOK52297.1	WT74_06090	WT74_05960	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
AOK52322.1	AOK53428.1	WT74_06090	WT74_12420	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	dGTP triphosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
AOK52322.1	AOK54019.1	WT74_06090	WT74_15680	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
AOK52322.1	AOK54759.1	WT74_06090	WT74_18195	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
AOK52322.1	AOK54760.1	WT74_06090	WT74_18200	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.509
AOK52322.1	AOK54991.1	WT74_06090	WT74_19570	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.481
AOK52322.1	AOK55035.1	WT74_06090	WT74_19825	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.622

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