(21 nodes) Dynein complex network (Caenorhabditis latens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FL83_24364	Uncharacterized protein. (106 aa)
	FL83_06683	Uncharacterized protein. (186 aa)
	FL83_06627	WD_REPEATS_REGION domain-containing protein. (650 aa)
	FL83_04865	Uncharacterized protein. (472 aa)
	FL83_04860	Dynein light chain. (90 aa)
	FL83_03506	Uncharacterized protein. (123 aa)
	FL83_23246	Uncharacterized protein. (128 aa)
	FL83_21568	Uncharacterized protein. (429 aa)
	FL83_19853	Uncharacterized protein. (331 aa)
	FL83_19436	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. (441 aa)
	FL83_18838	Uncharacterized protein. (4570 aa)
	FL83_18706	Uncharacterized protein. (106 aa)
	FL83_18165	DHC_N2 domain-containing protein. (2088 aa)
	FL83_16463	Dynein light chain. (89 aa)
	FL83_13119	Uncharacterized protein. (2545 aa)
	FL83_12355	Uncharacterized protein. (1371 aa)
	FL83_11532	Uncharacterized protein. (361 aa)
	FL83_11506	Uncharacterized protein. (233 aa)
	FL83_12077	Uncharacterized protein. (3284 aa)
	FL83_11507	Uncharacterized protein. (219 aa)
	FL83_06965	Uncharacterized protein. (659 aa)

Your Current Organism:

Caenorhabditis latens

NCBI taxonomy Id: 1503980
Other names: C. latens, Caenorhabditis latens Felix, Braendle & Cutter, 2014, Caenorhabditis sp. 23 KK-2011

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FL83_03506	FL83_04860	A0A261CIH0	A0A261CFC6	Uncharacterized protein.	Dynein light chain.	0.929
FL83_03506	FL83_06627	A0A261CIH0	A0A261C9I3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.974
FL83_03506	FL83_06683	A0A261CIH0	A0A261C9G6	Uncharacterized protein.	Uncharacterized protein.	0.889
FL83_03506	FL83_06965	A0A261CIH0	A0A261C826	Uncharacterized protein.	Uncharacterized protein.	0.622
FL83_03506	FL83_11506	A0A261CIH0	A0A261BVA6	Uncharacterized protein.	Uncharacterized protein.	0.792
FL83_03506	FL83_11507	A0A261CIH0	A0A261BX08	Uncharacterized protein.	Uncharacterized protein.	0.827
FL83_03506	FL83_11532	A0A261CIH0	A0A261BTQ5	Uncharacterized protein.	Uncharacterized protein.	0.953
FL83_03506	FL83_12077	A0A261CIH0	A0A261BVK5	Uncharacterized protein.	Uncharacterized protein.	0.868
FL83_03506	FL83_12355	A0A261CIH0	A0A261BR61	Uncharacterized protein.	Uncharacterized protein.	0.897
FL83_03506	FL83_13119	A0A261CIH0	A0A261BQX9	Uncharacterized protein.	Uncharacterized protein.	0.913
FL83_03506	FL83_16463	A0A261CIH0	A0A261BGX2	Uncharacterized protein.	Dynein light chain.	0.889
FL83_03506	FL83_18165	A0A261CIH0	A0A261B1B1	Uncharacterized protein.	DHC_N2 domain-containing protein.	0.878
FL83_03506	FL83_18706	A0A261CIH0	A0A261ATX2	Uncharacterized protein.	Uncharacterized protein.	0.868
FL83_03506	FL83_18838	A0A261CIH0	A0A261ATB2	Uncharacterized protein.	Uncharacterized protein.	0.831
FL83_03506	FL83_21568	A0A261CIH0	A0A261A0H9	Uncharacterized protein.	Uncharacterized protein.	0.410
FL83_03506	FL83_23246	A0A261CIH0	A0A260ZL08	Uncharacterized protein.	Uncharacterized protein.	0.889
FL83_03506	FL83_24364	A0A261CIH0	A0A260Z298	Uncharacterized protein.	Uncharacterized protein.	0.994
FL83_04860	FL83_03506	A0A261CFC6	A0A261CIH0	Dynein light chain.	Uncharacterized protein.	0.929
FL83_04860	FL83_06627	A0A261CFC6	A0A261C9I3	Dynein light chain.	WD_REPEATS_REGION domain-containing protein.	0.930
FL83_04860	FL83_06683	A0A261CFC6	A0A261C9G6	Dynein light chain.	Uncharacterized protein.	0.426