39 items (Panicum hallii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GQ55_7G077300	Uncharacterized protein. (393 aa)
	GQ55_7G025200	KIX_2 domain-containing protein. (1015 aa)
	GQ55_7G025100	KIX_2 domain-containing protein. (1104 aa)
	GQ55_8G229900	Uncharacterized protein. (212 aa)
	GQ55_9G647300	Uncharacterized protein. (514 aa)
	GQ55_9G446900	Uncharacterized protein. (230 aa)
	GQ55_9G097300	Uncharacterized protein. (230 aa)
	GQ55_9G083900	Transcriptional adapter. (565 aa)
	GQ55_9G074500	Uncharacterized protein. (306 aa)
	GQ55_9G001500	Uncharacterized protein. (737 aa)
	GQ55_9G002100	ASCH domain-containing protein. (317 aa)
	GQ55_5G040200	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (112 aa)
	GQ55_6G294300	KIX_2 domain-containing protein. (1323 aa)
	GQ55_6G164600	HTH cro/C1-type domain-containing protein. (142 aa)
	GQ55_7G314000	Uncharacterized protein. (425 aa)
	MED20	Mediator of RNA polymerase II transcription subunit 20; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (226 aa)
	GQ55_2G254000	zf-C2HC5 domain-containing protein. (414 aa)
	GQ55_2G213200	Uncharacterized protein. (903 aa)
	GQ55_2G051400	Uncharacterized protein. (129 aa)
	GQ55_3G450600	Uncharacterized protein. (323 aa)
	GQ55_3G173500	TMF_TATA_bd domain-containing protein. (1043 aa)
	GQ55_4G267200	Uncharacterized protein. (256 aa)
	GQ55_4G259000	Uncharacterized protein. (1275 aa)
	GQ55_4G110300	EF-hand domain-containing protein. (1377 aa)
	GQ55_4G097200	HTH cro/C1-type domain-containing protein. (156 aa)
	GQ55_4G021300	Uncharacterized protein. (1509 aa)
	GQ55_5G424300	Uncharacterized protein. (414 aa)
	GQ55_5G296500	TAF domain-containing protein. (540 aa)
	GQ55_5G275600	Uncharacterized protein. (156 aa)
	GQ55_5G204900	TAFII28 domain-containing protein. (208 aa)
	GQ55_5G188800	Uncharacterized protein. (191 aa)
	GQ55_5G052400	Uncharacterized protein. (1267 aa)
	GQ55_2G318500	Uncharacterized protein. (205 aa)
	GQ55_2G431200	Uncharacterized protein. (190 aa)
	GQ55_1G030300	Uncharacterized protein. (1720 aa)
	GQ55_1G223000	Uncharacterized protein. (379 aa)
	GQ55_1G261400	PC4 domain-containing protein. (103 aa)
	GQ55_1G433700	Uncharacterized protein. (801 aa)
	GQ55_7G244700	Uncharacterized protein. (236 aa)

Your Current Organism:

Panicum hallii

NCBI taxonomy Id: 1504633
Other names: P. hallii var. hallii, Panicum hallii var. hallii

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GQ55_1G261400	GQ55_5G188800	A0A2T7F7L8	A0A2T7DHU6	PC4 domain-containing protein.	Uncharacterized protein.	0.777
GQ55_2G213200	GQ55_4G267200	A0A2T7ER04	A0A2T7E0F9	Uncharacterized protein.	Uncharacterized protein.	0.461
GQ55_2G213200	GQ55_5G424300	A0A2T7ER04	A0A2T7DP78	Uncharacterized protein.	Uncharacterized protein.	0.606
GQ55_2G213200	GQ55_6G294300	A0A2T7ER04	A0A2T7DB00	Uncharacterized protein.	KIX_2 domain-containing protein.	0.617
GQ55_2G213200	MED20	A0A2T7ER04	A0A2T7EST8	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 20; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.560
GQ55_2G431200	GQ55_3G450600	A0A2T7EYH8	A0A2T7EIG0	Uncharacterized protein.	Uncharacterized protein.	0.729
GQ55_2G431200	GQ55_4G267200	A0A2T7EYH8	A0A2T7E0F9	Uncharacterized protein.	Uncharacterized protein.	0.775
GQ55_2G431200	GQ55_5G040200	A0A2T7EYH8	A0A2T7DCM2	Uncharacterized protein.	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	0.968
GQ55_2G431200	GQ55_5G204900	A0A2T7EYH8	A0A2T7DIF2	Uncharacterized protein.	TAFII28 domain-containing protein.	0.991
GQ55_2G431200	GQ55_5G296500	A0A2T7EYH8	A0A2T7DLF9	Uncharacterized protein.	TAF domain-containing protein.	0.991
GQ55_2G431200	GQ55_9G074500	A0A2T7EYH8	A0A2T7C0S5	Uncharacterized protein.	Uncharacterized protein.	0.729
GQ55_2G431200	GQ55_9G083900	A0A2T7EYH8	A0A2T7C0Y7	Uncharacterized protein.	Transcriptional adapter.	0.990
GQ55_2G431200	GQ55_9G446900	A0A2T7EYH8	A0A2T7CBL5	Uncharacterized protein.	Uncharacterized protein.	0.835
GQ55_3G450600	GQ55_2G431200	A0A2T7EIG0	A0A2T7EYH8	Uncharacterized protein.	Uncharacterized protein.	0.729
GQ55_3G450600	GQ55_5G040200	A0A2T7EIG0	A0A2T7DCM2	Uncharacterized protein.	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	0.532
GQ55_3G450600	GQ55_5G296500	A0A2T7EIG0	A0A2T7DLF9	Uncharacterized protein.	TAF domain-containing protein.	0.838
GQ55_3G450600	GQ55_7G077300	A0A2T7EIG0	A0A2T7CSW4	Uncharacterized protein.	Uncharacterized protein.	0.415
GQ55_3G450600	GQ55_7G314000	A0A2T7EIG0	A0A2T7D109	Uncharacterized protein.	Uncharacterized protein.	0.449
GQ55_3G450600	GQ55_9G083900	A0A2T7EIG0	A0A2T7C0Y7	Uncharacterized protein.	Transcriptional adapter.	0.757
GQ55_3G450600	GQ55_9G446900	A0A2T7EIG0	A0A2T7CBL5	Uncharacterized protein.	Uncharacterized protein.	0.729