STRINGSTRING
GQ55_9G540600 GQ55_9G540600 GQ55_9G482800 GQ55_9G482800 GQ55_9G537300 GQ55_9G537300 GQ55_1G406600 GQ55_1G406600 GQ55_1G353100 GQ55_1G353100 GQ55_1G342500 GQ55_1G342500 GQ55_1G137600 GQ55_1G137600 GQ55_1G102900 GQ55_1G102900 GQ55_1G068900 GQ55_1G068900 GQ55_1G011500 GQ55_1G011500 GQ55_2G454600 GQ55_2G454600 GQ55_8G026800 GQ55_8G026800 GQ55_8G252000 GQ55_8G252000 GQ55_8G263000 GQ55_8G263000 GQ55_7G082600 GQ55_7G082600 GQ55_7G092800 GQ55_7G092800 GQ55_7G146400 GQ55_7G146400 GQ55_7G244700 GQ55_7G244700 GQ55_7G257900 GQ55_7G257900 GQ55_7G257700 GQ55_7G257700 GQ55_6G035900 GQ55_6G035900 GQ55_6G039400 GQ55_6G039400 GQ55_6G036400 GQ55_6G036400 GQ55_6G038200 GQ55_6G038200 GQ55_6G047100 GQ55_6G047100 GQ55_6G055500 GQ55_6G055500 GQ55_6G084200 GQ55_6G084200 GQ55_6G261800 GQ55_6G261800 GQ55_6G273900 GQ55_6G273900 GQ55_5G004100 GQ55_5G004100 GQ55_5G040200 GQ55_5G040200 GQ55_5G045800 GQ55_5G045800 GQ55_5G084400 GQ55_5G084400 GQ55_5G093500 GQ55_5G093500 GQ55_5G141800 GQ55_5G141800 GQ55_5G198100 GQ55_5G198100 GQ55_5G204900 GQ55_5G204900 GQ55_5G224500 GQ55_5G224500 GQ55_5G296500 GQ55_5G296500 GQ55_5G342900 GQ55_5G342900 GQ55_4G067700 GQ55_4G067700 GQ55_4G069700 GQ55_4G069700 GQ55_4G299000 GQ55_4G299000 GQ55_4G301300 GQ55_4G301300 GQ55_4G326100 GQ55_4G326100 GQ55_4G335500 GQ55_4G335500 GQ55_3G041100 GQ55_3G041100 GQ55_3G046500 GQ55_3G046500 GQ55_3G081500 GQ55_3G081500 GQ55_3G083800 GQ55_3G083800 GQ55_3G109900 GQ55_3G109900 GQ55_3G154800 GQ55_3G154800 GQ55_3G206900 GQ55_3G206900 GQ55_3G212300 GQ55_3G212300 GQ55_3G219900 GQ55_3G219900 GQ55_3G221600 GQ55_3G221600 GQ55_3G278200 GQ55_3G278200 GQ55_3G297500 GQ55_3G297500 GQ55_3G317500 GQ55_3G317500 GQ55_3G361700 GQ55_3G361700 GQ55_3G434800 GQ55_3G434800 GQ55_3G446700 GQ55_3G446700 GQ55_3G458300 GQ55_3G458300 GQ55_2G007700 GQ55_2G007700 GQ55_2G062900 GQ55_2G062900 GQ55_2G090400 GQ55_2G090400 GQ55_2G122300 GQ55_2G122300 GQ55_2G432900 GQ55_2G432900 GQ55_2G431200 GQ55_2G431200 GQ55_9G594100 GQ55_9G594100 GQ55_2G306500 GQ55_2G306500 GQ55_2G263300 GQ55_2G263300 GQ55_2G251900 GQ55_2G251900 GQ55_2G245500 GQ55_2G245500 GQ55_9G011800 GQ55_9G011800 GQ55_9G139300 GQ55_9G139300 GQ55_9G142000 GQ55_9G142000 GQ55_9G184000 GQ55_9G184000 GQ55_9G238000 GQ55_9G238000 GQ55_9G300100 GQ55_9G300100 GQ55_9G304700 GQ55_9G304700 GQ55_9G307200 GQ55_9G307200 GQ55_9G351100 GQ55_9G351100 GQ55_9G366200 GQ55_9G366200 GQ55_9G416400 GQ55_9G416400 GQ55_9G431500 GQ55_9G431500 GQ55_9G446900 GQ55_9G446900
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GQ55_9G540600Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (536 aa)
GQ55_9G482800Uncharacterized protein. (219 aa)
GQ55_9G537300Uncharacterized protein. (210 aa)
GQ55_1G406600Transcription elongation factor SPT5. (1050 aa)
GQ55_1G353100BTP domain-containing protein. (247 aa)
GQ55_1G342500Uncharacterized protein. (908 aa)
GQ55_1G137600Uncharacterized protein. (689 aa)
GQ55_1G102900Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
GQ55_1G068900Uncharacterized protein. (217 aa)
GQ55_1G011500RPOL4c domain-containing protein. (143 aa)
GQ55_2G454600Ubiquitin-like domain-containing protein. (94 aa)
GQ55_8G026800TFIIE domain-containing protein. (345 aa)
GQ55_8G252000DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (115 aa)
GQ55_8G263000Uncharacterized protein. (378 aa)
GQ55_7G082600DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (114 aa)
GQ55_7G092800Uncharacterized protein. (1054 aa)
GQ55_7G146400Uncharacterized protein. (232 aa)
GQ55_7G244700Uncharacterized protein. (236 aa)
GQ55_7G257900Uncharacterized protein. (795 aa)
GQ55_7G257700Uncharacterized protein. (708 aa)
GQ55_6G035900Uncharacterized protein. (558 aa)
GQ55_6G039400Uncharacterized protein. (629 aa)
GQ55_6G036400Uncharacterized protein. (600 aa)
GQ55_6G038200DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1857 aa)
GQ55_6G047100Uncharacterized protein. (239 aa)
GQ55_6G055500CID domain-containing protein. (962 aa)
GQ55_6G084200Uncharacterized protein. (120 aa)
GQ55_6G261800Uncharacterized protein. (553 aa)
GQ55_6G273900Uncharacterized protein. (775 aa)
GQ55_5G004100Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (108 aa)
GQ55_5G040200Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (112 aa)
GQ55_5G045800Uncharacterized protein. (572 aa)
GQ55_5G084400TFIID_20kDa domain-containing protein. (508 aa)
GQ55_5G093500TFIID_20kDa domain-containing protein. (561 aa)
GQ55_5G141800Uncharacterized protein. (271 aa)
GQ55_5G198100Uncharacterized protein. (766 aa)
GQ55_5G204900TAFII28 domain-containing protein. (208 aa)
GQ55_5G224500TAFII55_N domain-containing protein. (199 aa)
GQ55_5G296500TAF domain-containing protein. (540 aa)
GQ55_5G342900Uncharacterized protein. (179 aa)
GQ55_4G067700Uncharacterized protein. (657 aa)
GQ55_4G069700Uncharacterized protein. (1806 aa)
GQ55_4G299000Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (279 aa)
GQ55_4G301300Transcription elongation factor SPT5. (1048 aa)
GQ55_4G326100Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (96 aa)
GQ55_4G335500Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (89 aa)
GQ55_3G041100Uncharacterized protein. (200 aa)
GQ55_3G046500Uncharacterized protein. (71 aa)
GQ55_3G081500Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (106 aa)
GQ55_3G083800Uncharacterized protein. (70 aa)
GQ55_3G109900Helicase ATP-binding domain-containing protein. (758 aa)
GQ55_3G154800Uncharacterized protein. (661 aa)
GQ55_3G206900Uncharacterized protein. (260 aa)
GQ55_3G212300Uncharacterized protein. (1677 aa)
GQ55_3G219900Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1625 aa)
GQ55_3G221600Uncharacterized protein. (195 aa)
GQ55_3G278200Uncharacterized protein. (177 aa)
GQ55_3G297500Uncharacterized protein. (70 aa)
GQ55_3G317500Uncharacterized protein. (291 aa)
GQ55_3G361700Uncharacterized protein. (389 aa)
GQ55_3G434800DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (114 aa)
GQ55_3G446700BTP domain-containing protein. (359 aa)
GQ55_3G458300Uncharacterized protein. (283 aa)
GQ55_2G007700Uncharacterized protein. (672 aa)
GQ55_2G062900RNA_pol_L_2 domain-containing protein. (120 aa)
GQ55_2G090400TFIID_20kDa domain-containing protein. (496 aa)
GQ55_2G122300Uncharacterized protein. (1062 aa)
GQ55_2G432900TFIIS-type domain-containing protein. (169 aa)
GQ55_2G431200Uncharacterized protein. (190 aa)
GQ55_9G594100Uncharacterized protein. (244 aa)
GQ55_2G306500Uncharacterized protein. (2402 aa)
GQ55_2G263300Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. (157 aa)
GQ55_2G251900Peptidase_M1 domain-containing protein. (1380 aa)
GQ55_2G245500PCI domain-containing protein. (408 aa)
GQ55_9G011800Uncharacterized protein. (663 aa)
GQ55_9G139300Uncharacterized protein. (379 aa)
GQ55_9G142000Uncharacterized protein. (200 aa)
GQ55_9G184000Uncharacterized protein. (229 aa)
GQ55_9G238000Uncharacterized protein. (225 aa)
GQ55_9G300100Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (531 aa)
GQ55_9G304700HTH TFE/IIEalpha-type domain-containing protein. (455 aa)
GQ55_9G307200Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (278 aa)
GQ55_9G351100Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (177 aa)
GQ55_9G366200Uncharacterized protein. (1393 aa)
GQ55_9G416400Uncharacterized protein. (1340 aa)
GQ55_9G431500Uncharacterized protein. (907 aa)
GQ55_9G446900Uncharacterized protein. (230 aa)
Your Current Organism:
Panicum hallii
NCBI taxonomy Id: 1504633
Other names: P. hallii var. hallii, Panicum hallii var. hallii
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