61 items (Panicum hallii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GQ55_3G382500	SGF29 C-terminal domain-containing protein. (281 aa)
	GQ55_9G074500	Uncharacterized protein. (306 aa)
	GQ55_9G304600	Uncharacterized protein. (1319 aa)
	GQ55_9G430400	Uncharacterized protein. (665 aa)
	GQ55_9G435700	Myb_DNA-bind_3 domain-containing protein. (338 aa)
	GQ55_9G446900	Uncharacterized protein. (230 aa)
	GQ55_9G488300	Bromo domain-containing protein. (538 aa)
	GQ55_9G645900	Uncharacterized protein; Belongs to the actin family. (443 aa)
	GQ55_8G162800	Myb_DNA-bind_3 domain-containing protein. (296 aa)
	GQ55_7G051400	Myb_DNA-bind_3 domain-containing protein. (282 aa)
	GQ55_7G077300	Uncharacterized protein. (393 aa)
	GQ55_7G135600	Uncharacterized protein. (451 aa)
	GQ55_7G135800	Uncharacterized protein. (430 aa)
	GQ55_7G135700	Uncharacterized protein. (474 aa)
	GQ55_7G156700	Uncharacterized protein. (2597 aa)
	GQ55_7G248800	Uncharacterized protein. (498 aa)
	GQ55_7G290200	Uncharacterized protein. (2512 aa)
	GQ55_7G293600	Myb_DNA-bind_3 domain-containing protein. (298 aa)
	GQ55_7G306900	Ubiquitinyl hydrolase 1. (561 aa)
	GQ55_7G314000	Uncharacterized protein. (425 aa)
	GQ55_6G097500	Enhancer of polycomb-like protein. (829 aa)
	GQ55_5G077400	Uncharacterized protein. (1335 aa)
	GQ55_5G093500	TFIID_20kDa domain-containing protein. (561 aa)
	GQ55_5G100400	RuvB-like helicase; Belongs to the RuvB family. (455 aa)
	GQ55_5G271000	Uncharacterized protein. (1926 aa)
	GQ55_5G296500	TAF domain-containing protein. (540 aa)
	GQ55_5G337600	Uncharacterized protein. (1022 aa)
	GQ55_5G501600	Tudor domain-containing protein. (1525 aa)
	GQ55_5G505400	Uncharacterized protein. (628 aa)
	GQ55_4G021300	Uncharacterized protein. (1509 aa)
	GQ55_4G087500	Uncharacterized protein. (664 aa)
	GQ55_4G143500	Uncharacterized protein. (654 aa)
	GQ55_4G233400	Tudor domain-containing protein. (1703 aa)
	GQ55_4G298800	Uncharacterized protein. (1182 aa)
	GQ55_4G303000	Mechanosensitive ion channel protein. (740 aa)
	GQ55_4G346100	Uncharacterized protein. (243 aa)
	GQ55_3G060000	zf-C3Hc3H domain-containing protein. (258 aa)
	GQ55_3G074700	AB hydrolase-1 domain-containing protein. (232 aa)
	GQ55_3G146000	Uncharacterized protein. (1866 aa)
	GQ55_3G147000	FHA domain-containing protein. (838 aa)
	GQ55_3G187400	SANT domain-containing protein. (440 aa)
	GQ55_3G209600	Uncharacterized protein. (116 aa)
	GQ55_3G372100	zf-C3Hc3H domain-containing protein. (301 aa)
	GQ55_3G450600	Uncharacterized protein. (323 aa)
	GQ55_2G032000	Myb_DNA-bind_3 domain-containing protein. (283 aa)
	GQ55_2G056900	FHA domain-containing protein. (823 aa)
	GQ55_2G116100	Myb_DNA-bind_3 domain-containing protein. (295 aa)
	GQ55_2G185300	Myb_DNA-bind_3 domain-containing protein. (247 aa)
	GQ55_2G201200	Enhancer of polycomb-like protein. (468 aa)
	GQ55_2G263300	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. (157 aa)
	GQ55_2G284100	Myb_DNA-bind_3 domain-containing protein. (287 aa)
	GQ55_2G399400	Bromo domain-containing protein. (593 aa)
	GQ55_2G412800	RuvB-like helicase; Belongs to the RuvB family. (478 aa)
	GQ55_2G431200	Uncharacterized protein. (190 aa)
	GQ55_2G455600	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (3872 aa)
	GQ55_1G030300	Uncharacterized protein. (1720 aa)
	GQ55_1G053700	Myb-like domain-containing protein. (393 aa)
	GQ55_1G223000	Uncharacterized protein. (379 aa)
	GQ55_1G337400	Uncharacterized protein. (486 aa)
	GQ55_1G357600	Uncharacterized protein. (170 aa)
	GQ55_1G403600	Uncharacterized protein. (1484 aa)

Your Current Organism:

Panicum hallii

NCBI taxonomy Id: 1504633
Other names: P. hallii var. hallii, Panicum hallii var. hallii

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GQ55_1G030300	GQ55_5G100400	A0A2T7F1N4	A0A2T7DER2	Uncharacterized protein.	RuvB-like helicase; Belongs to the RuvB family.	0.651
GQ55_1G337400	GQ55_2G263300	A0A2T7FAA7	A0A2T7ESJ7	Uncharacterized protein.	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.	0.784
GQ55_1G337400	GQ55_2G431200	A0A2T7FAA7	A0A2T7EYH8	Uncharacterized protein.	Uncharacterized protein.	0.724
GQ55_1G337400	GQ55_2G455600	A0A2T7FAA7	A0A2T7EZF3	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.815
GQ55_1G337400	GQ55_3G382500	A0A2T7FAA7	A0A2T7EGE4	Uncharacterized protein.	SGF29 C-terminal domain-containing protein.	0.735
GQ55_1G337400	GQ55_5G093500	A0A2T7FAA7	A0A2T7DEI0	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.692
GQ55_1G337400	GQ55_5G296500	A0A2T7FAA7	A0A2T7DLF9	Uncharacterized protein.	TAF domain-containing protein.	0.757
GQ55_1G337400	GQ55_7G306900	A0A2T7FAA7	A0A2T7D0S6	Uncharacterized protein.	Ubiquitinyl hydrolase 1.	0.714
GQ55_1G337400	GQ55_9G446900	A0A2T7FAA7	A0A2T7CBL5	Uncharacterized protein.	Uncharacterized protein.	0.724
GQ55_1G357600	GQ55_1G403600	A0A2T7FB28	A0A2T7FCM3	Uncharacterized protein.	Uncharacterized protein.	0.922
GQ55_1G357600	GQ55_2G201200	A0A2T7FB28	A0A2T7EQN8	Uncharacterized protein.	Enhancer of polycomb-like protein.	0.978
GQ55_1G357600	GQ55_2G412800	A0A2T7FB28	A0A2T7EXU9	Uncharacterized protein.	RuvB-like helicase; Belongs to the RuvB family.	0.807
GQ55_1G357600	GQ55_2G455600	A0A2T7FB28	A0A2T7EZF3	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.992
GQ55_1G357600	GQ55_3G146000	A0A2T7FB28	A0A2T7E9G1	Uncharacterized protein.	Uncharacterized protein.	0.545
GQ55_1G357600	GQ55_3G187400	A0A2T7FB28	A0A2T7EB13	Uncharacterized protein.	SANT domain-containing protein.	0.992
GQ55_1G357600	GQ55_4G298800	A0A2T7FB28	A0A2T7E1L7	Uncharacterized protein.	Uncharacterized protein.	0.922
GQ55_1G357600	GQ55_4G346100	A0A2T7FB28	A0A2T7E390	Uncharacterized protein.	Uncharacterized protein.	0.916
GQ55_1G357600	GQ55_5G100400	A0A2T7FB28	A0A2T7DER2	Uncharacterized protein.	RuvB-like helicase; Belongs to the RuvB family.	0.940
GQ55_1G357600	GQ55_5G271000	A0A2T7FB28	A0A2T7DKM3	Uncharacterized protein.	Uncharacterized protein.	0.545
GQ55_1G357600	GQ55_5G505400	A0A2T7FB28	A0A2T7DS29	Uncharacterized protein.	Uncharacterized protein.	0.958