57 items (Panicum hallii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GQ55_9G092800	Uncharacterized protein; Belongs to the cyclin family. (326 aa)
	GQ55_1G196100	TPR_REGION domain-containing protein. (1069 aa)
	GQ55_1G102900	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
	GQ55_1G011500	RPOL4c domain-containing protein. (143 aa)
	GQ55_2G432900	TFIIS-type domain-containing protein. (169 aa)
	GQ55_2G251900	Peptidase_M1 domain-containing protein. (1380 aa)
	GQ55_2G090400	TFIID_20kDa domain-containing protein. (496 aa)
	GQ55_2G062900	RNA_pol_L_2 domain-containing protein. (120 aa)
	GQ55_2G007700	Uncharacterized protein. (672 aa)
	GQ55_3G434800	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (114 aa)
	GQ55_3G425100	Plus3 domain-containing protein. (651 aa)
	GQ55_3G361700	Uncharacterized protein. (389 aa)
	GQ55_3G317500	Uncharacterized protein. (291 aa)
	GQ55_3G283000	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (428 aa)
	GQ55_3G278200	Uncharacterized protein. (177 aa)
	GQ55_3G206900	Uncharacterized protein. (260 aa)
	GQ55_3G154800	Uncharacterized protein. (661 aa)
	GQ55_3G081500	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (106 aa)
	GQ55_4G323300	MAT1 domain-containing protein. (194 aa)
	GQ55_4G299000	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (279 aa)
	GQ55_4G069700	Uncharacterized protein. (1806 aa)
	GQ55_4G067700	Uncharacterized protein. (657 aa)
	GQ55_4G037500	Uncharacterized protein. (180 aa)
	GQ55_4G037400	Protein kinase domain-containing protein. (650 aa)
	GQ55_5G224500	TAFII55_N domain-containing protein. (199 aa)
	GQ55_5G204900	TAFII28 domain-containing protein. (208 aa)
	GQ55_5G162400	Uncharacterized protein. (1826 aa)
	GQ55_5G141800	Uncharacterized protein. (271 aa)
	GQ55_5G139200	Plus3 domain-containing protein. (923 aa)
	GQ55_5G121700	Uncharacterized protein. (210 aa)
	GQ55_5G093500	TFIID_20kDa domain-containing protein. (561 aa)
	GQ55_5G084400	TFIID_20kDa domain-containing protein. (508 aa)
	GQ55_5G004100	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (108 aa)
	GQ55_6G273900	Uncharacterized protein. (775 aa)
	GQ55_6G084200	Uncharacterized protein. (120 aa)
	GQ55_6G038200	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1857 aa)
	GQ55_6G039400	Uncharacterized protein. (629 aa)
	GQ55_7G300100	CID domain-containing protein. (530 aa)
	GQ55_7G206400	General transcription factor IIH subunit. (431 aa)
	GQ55_7G146400	Uncharacterized protein. (232 aa)
	GQ55_7G116300	PPR_long domain-containing protein. (958 aa)
	GQ55_7G082600	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (114 aa)
	GQ55_8G252000	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (115 aa)
	GQ55_8G246200	WD_REPEATS_REGION domain-containing protein. (322 aa)
	GQ55_8G026800	TFIIE domain-containing protein. (345 aa)
	GQ55_9G644700	Uncharacterized protein. (2071 aa)
	GQ55_9G594100	Uncharacterized protein. (244 aa)
	GQ55_9G540600	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (536 aa)
	GQ55_9G482800	Uncharacterized protein. (219 aa)
	GQ55_9G431500	Uncharacterized protein. (907 aa)
	GQ55_9G351100	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (177 aa)
	GQ55_9G307200	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (278 aa)
	GQ55_9G304700	HTH TFE/IIEalpha-type domain-containing protein. (455 aa)
	GQ55_9G300100	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (531 aa)
	GQ55_9G185700	Uncharacterized protein. (1726 aa)
	GQ55_9G147900	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1230 aa)
	GQ55_9G139300	Uncharacterized protein. (379 aa)

Your Current Organism:

Panicum hallii

NCBI taxonomy Id: 1504633
Other names: P. hallii var. hallii, Panicum hallii var. hallii

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GQ55_1G011500	GQ55_1G102900	A0A2T7F108	A0A2T7F490	RPOL4c domain-containing protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.964
GQ55_1G011500	GQ55_1G196100	A0A2T7F108	A0A2T7F6B3	RPOL4c domain-containing protein.	TPR_REGION domain-containing protein.	0.930
GQ55_1G011500	GQ55_2G007700	A0A2T7F108	A0A2T7EK66	RPOL4c domain-containing protein.	Uncharacterized protein.	0.928
GQ55_1G011500	GQ55_2G062900	A0A2T7F108	A0A2T7EM16	RPOL4c domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.999
GQ55_1G011500	GQ55_2G090400	A0A2T7F108	A0A2T7EMZ5	RPOL4c domain-containing protein.	TFIID_20kDa domain-containing protein.	0.934
GQ55_1G011500	GQ55_2G251900	A0A2T7F108	A0A2T7ES60	RPOL4c domain-containing protein.	Peptidase_M1 domain-containing protein.	0.995
GQ55_1G011500	GQ55_2G432900	A0A2T7F108	A0A2T7EYK5	RPOL4c domain-containing protein.	TFIIS-type domain-containing protein.	0.987
GQ55_1G011500	GQ55_3G081500	A0A2T7F108	A0A2T7E707	RPOL4c domain-containing protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.964
GQ55_1G011500	GQ55_3G154800	A0A2T7F108	A0A2T7E9U1	RPOL4c domain-containing protein.	Uncharacterized protein.	0.942
GQ55_1G011500	GQ55_3G206900	A0A2T7F108	A0A2T7EBM2	RPOL4c domain-containing protein.	Uncharacterized protein.	0.990
GQ55_1G011500	GQ55_3G278200	A0A2T7F108	A0A2T7EE33	RPOL4c domain-containing protein.	Uncharacterized protein.	0.987
GQ55_1G011500	GQ55_3G283000	A0A2T7F108	A0A2T7EE93	RPOL4c domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.998
GQ55_1G011500	GQ55_3G317500	A0A2T7F108	A0A2T7EFB1	RPOL4c domain-containing protein.	Uncharacterized protein.	0.915
GQ55_1G011500	GQ55_3G361700	A0A2T7F108	A0A2T7EG07	RPOL4c domain-containing protein.	Uncharacterized protein.	0.998
GQ55_1G011500	GQ55_3G425100	A0A2T7F108	A0A2T7EHL6	RPOL4c domain-containing protein.	Plus3 domain-containing protein.	0.941
GQ55_1G011500	GQ55_3G434800	A0A2T7F108	A0A2T7EHZ1	RPOL4c domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.987
GQ55_1G011500	GQ55_4G037400	A0A2T7F108	A0A2T7DUX9	RPOL4c domain-containing protein.	Protein kinase domain-containing protein.	0.620
GQ55_1G011500	GQ55_4G037500	A0A2T7F108	A0A2T7DUY9	RPOL4c domain-containing protein.	Uncharacterized protein.	0.620
GQ55_1G011500	GQ55_4G067700	A0A2T7F108	A0A2T7DVZ6	RPOL4c domain-containing protein.	Uncharacterized protein.	0.942
GQ55_1G011500	GQ55_4G069700	A0A2T7F108	A0A2T7DW19	RPOL4c domain-containing protein.	Uncharacterized protein.	0.993