STRINGSTRING
GQ55_2G140600 GQ55_2G140600 GQ55_2G431200 GQ55_2G431200 GQ55_2G432900 GQ55_2G432900 GQ55_2G459000 GQ55_2G459000 GQ55_1G011500 GQ55_1G011500 GQ55_9G446900 GQ55_9G446900 GQ55_9G435600 GQ55_9G435600 GQ55_9G431500 GQ55_9G431500 GQ55_9G365200 GQ55_9G365200 GQ55_9G351100 GQ55_9G351100 GQ55_9G346000 GQ55_9G346000 GQ55_9G335900 GQ55_9G335900 GQ55_9G307200 GQ55_9G307200 GQ55_9G304700 GQ55_9G304700 GQ55_9G300100 GQ55_9G300100 GQ55_9G266400 GQ55_9G266400 GQ55_9G238000 GQ55_9G238000 GQ55_9G184000 GQ55_9G184000 GQ55_9G170900 GQ55_9G170900 GQ55_9G147900 GQ55_9G147900 GQ55_9G142000 GQ55_9G142000 GQ55_9G092800 GQ55_9G092800 GQ55_9G011800 GQ55_9G011800 GQ55_9G540600 GQ55_9G540600 GQ55_9G577800 GQ55_9G577800 GQ55_9G594100 GQ55_9G594100 GQ55_8G026400 GQ55_8G026400 GQ55_8G026800 GQ55_8G026800 GQ55_8G252000 GQ55_8G252000 GQ55_7G082600 GQ55_7G082600 GQ55_7G100500 GQ55_7G100500 GQ55_7G100800 GQ55_7G100800 GQ55_7G100700 GQ55_7G100700 GQ55_7G190000 GQ55_7G190000 GQ55_7G206400 GQ55_7G206400 GQ55_7G303000 GQ55_7G303000 GQ55_7G321800 GQ55_7G321800 GQ55_7G321600 GQ55_7G321600 GQ55_7G330600 GQ55_7G330600 GQ55_7G334100 GQ55_7G334100 GQ55_6G035900 GQ55_6G035900 GQ55_6G036400 GQ55_6G036400 GQ55_6G047900 GQ55_6G047900 GQ55_6G261800 GQ55_6G261800 GQ55_6G273900 GQ55_6G273900 GQ55_5G004100 GQ55_5G004100 GQ55_5G084400 GQ55_5G084400 GQ55_5G093500 GQ55_5G093500 GQ55_5G121700 GQ55_5G121700 GQ55_5G141800 GQ55_5G141800 GQ55_5G198100 GQ55_5G198100 GQ55_5G204900 GQ55_5G204900 GQ55_5G224500 GQ55_5G224500 GQ55_5G296500 GQ55_5G296500 GQ55_5G342900 GQ55_5G342900 GQ55_4G013100 GQ55_4G013100 GQ55_4G029100 GQ55_4G029100 GQ55_4G067700 GQ55_4G067700 GQ55_4G069700 GQ55_4G069700 GQ55_4G156000 GQ55_4G156000 GQ55_4G156100 GQ55_4G156100 GQ55_4G155900 GQ55_4G155900 GQ55_4G189100 GQ55_4G189100 GQ55_4G299000 GQ55_4G299000 GQ55_4G323300 GQ55_4G323300 GQ55_3G024300 GQ55_3G024300 GQ55_3G046500 GQ55_3G046500 GQ55_3G081500 GQ55_3G081500 GQ55_3G083800 GQ55_3G083800 GQ55_3G103200 GQ55_3G103200 GQ55_3G109900 GQ55_3G109900 GQ55_3G119600 GQ55_3G119600 GQ55_3G154800 GQ55_3G154800 GQ55_3G183700 GQ55_3G183700 GQ55_3G183600 GQ55_3G183600 GQ55_3G183800 GQ55_3G183800 GQ55_3G206900 GQ55_3G206900 GQ55_3G221600 GQ55_3G221600 GQ55_3G278200 GQ55_3G278200 GQ55_3G297500 GQ55_3G297500 GQ55_3G361700 GQ55_3G361700 GQ55_3G434800 GQ55_3G434800 GQ55_3G446700 GQ55_3G446700 GQ55_2G062900 GQ55_2G062900 GQ55_2G090400 GQ55_2G090400 GQ55_2G110900 GQ55_2G110900 GQ55_2G251900 GQ55_2G251900 GQ55_2G263300 GQ55_2G263300 GQ55_2G335400 GQ55_2G335400 GQ55_2G430800 GQ55_2G430800 GQ55_1G021300 GQ55_1G021300 GQ55_1G102900 GQ55_1G102900 GQ55_1G353100 GQ55_1G353100
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GQ55_2G140600RPOLD domain-containing protein. (327 aa)
GQ55_2G431200Uncharacterized protein. (190 aa)
GQ55_2G432900TFIIS-type domain-containing protein. (169 aa)
GQ55_2G459000Uncharacterized protein. (301 aa)
GQ55_1G011500RPOL4c domain-containing protein. (143 aa)
GQ55_9G446900Uncharacterized protein. (230 aa)
GQ55_9G435600Uncharacterized protein. (207 aa)
GQ55_9G431500Uncharacterized protein. (907 aa)
GQ55_9G365200Uncharacterized protein. (829 aa)
GQ55_9G351100Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (177 aa)
GQ55_9G346000Uncharacterized protein. (81 aa)
GQ55_9G335900Uncharacterized protein. (733 aa)
GQ55_9G307200Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (278 aa)
GQ55_9G304700HTH TFE/IIEalpha-type domain-containing protein. (455 aa)
GQ55_9G300100Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (531 aa)
GQ55_9G266400DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (409 aa)
GQ55_9G238000Uncharacterized protein. (225 aa)
GQ55_9G184000Uncharacterized protein. (229 aa)
GQ55_9G170900Uncharacterized protein. (143 aa)
GQ55_9G147900DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1230 aa)
GQ55_9G142000Uncharacterized protein. (200 aa)
GQ55_9G092800Uncharacterized protein; Belongs to the cyclin family. (326 aa)
GQ55_9G011800Uncharacterized protein. (663 aa)
GQ55_9G540600Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (536 aa)
GQ55_9G577800Uncharacterized protein. (534 aa)
GQ55_9G594100Uncharacterized protein. (244 aa)
GQ55_8G026400Uncharacterized protein. (261 aa)
GQ55_8G026800TFIIE domain-containing protein. (345 aa)
GQ55_8G252000DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (115 aa)
GQ55_7G082600DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (114 aa)
GQ55_7G100500SANTA domain-containing protein. (696 aa)
GQ55_7G100800SANTA domain-containing protein. (563 aa)
GQ55_7G100700Uncharacterized protein. (449 aa)
GQ55_7G190000Uncharacterized protein. (207 aa)
GQ55_7G206400General transcription factor IIH subunit. (431 aa)
GQ55_7G303000DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1233 aa)
GQ55_7G321800Uncharacterized protein. (105 aa)
GQ55_7G321600Uncharacterized protein. (105 aa)
GQ55_7G330600DUF4101 domain-containing protein. (800 aa)
GQ55_7G334100RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (451 aa)
GQ55_6G035900Uncharacterized protein. (558 aa)
GQ55_6G036400Uncharacterized protein. (600 aa)
GQ55_6G047900DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1298 aa)
GQ55_6G261800Uncharacterized protein. (553 aa)
GQ55_6G273900Uncharacterized protein. (775 aa)
GQ55_5G004100Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (108 aa)
GQ55_5G084400TFIID_20kDa domain-containing protein. (508 aa)
GQ55_5G093500TFIID_20kDa domain-containing protein. (561 aa)
GQ55_5G121700Uncharacterized protein. (210 aa)
GQ55_5G141800Uncharacterized protein. (271 aa)
GQ55_5G198100Uncharacterized protein. (766 aa)
GQ55_5G204900TAFII28 domain-containing protein. (208 aa)
GQ55_5G224500TAFII55_N domain-containing protein. (199 aa)
GQ55_5G296500TAF domain-containing protein. (540 aa)
GQ55_5G342900Uncharacterized protein. (179 aa)
GQ55_4G013100RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (462 aa)
GQ55_4G029100Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family. (144 aa)
GQ55_4G067700Uncharacterized protein. (657 aa)
GQ55_4G069700Uncharacterized protein. (1806 aa)
GQ55_4G156000DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (362 aa)
GQ55_4G156100RNA_pol_Rpb1_5 domain-containing protein. (738 aa)
GQ55_4G155900Uncharacterized protein. (268 aa)
GQ55_4G189100RNA_pol_Rpb1_5 domain-containing protein. (310 aa)
GQ55_4G299000Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (279 aa)
GQ55_4G323300MAT1 domain-containing protein. (194 aa)
GQ55_3G024300Uncharacterized protein. (263 aa)
GQ55_3G046500Uncharacterized protein. (71 aa)
GQ55_3G081500Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (106 aa)
GQ55_3G083800Uncharacterized protein. (70 aa)
GQ55_3G103200SHS2_Rpb7-N domain-containing protein. (175 aa)
GQ55_3G109900Helicase ATP-binding domain-containing protein. (758 aa)
GQ55_3G119600SHS2_Rpb7-N domain-containing protein. (175 aa)
GQ55_3G154800Uncharacterized protein. (661 aa)
GQ55_3G183700TFIIB-type domain-containing protein. (309 aa)
GQ55_3G183600TFIIB-type domain-containing protein. (310 aa)
GQ55_3G183800TFIIB domain-containing protein. (293 aa)
GQ55_3G206900Uncharacterized protein. (260 aa)
GQ55_3G221600Uncharacterized protein. (195 aa)
GQ55_3G278200Uncharacterized protein. (177 aa)
GQ55_3G297500Uncharacterized protein. (70 aa)
GQ55_3G361700Uncharacterized protein. (389 aa)
GQ55_3G434800DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (114 aa)
GQ55_3G446700BTP domain-containing protein. (359 aa)
GQ55_2G062900RNA_pol_L_2 domain-containing protein. (120 aa)
GQ55_2G090400TFIID_20kDa domain-containing protein. (496 aa)
GQ55_2G110900Uncharacterized protein. (52 aa)
GQ55_2G251900Peptidase_M1 domain-containing protein. (1380 aa)
GQ55_2G263300Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. (157 aa)
GQ55_2G335400TFIIB-type domain-containing protein. (312 aa)
GQ55_2G430800C1_2 domain-containing protein. (211 aa)
GQ55_1G021300Uncharacterized protein. (291 aa)
GQ55_1G102900Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
GQ55_1G353100BTP domain-containing protein. (247 aa)
Your Current Organism:
Panicum hallii
NCBI taxonomy Id: 1504633
Other names: P. hallii var. hallii, Panicum hallii var. hallii
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