22 items (Bradyrhizobium centrolobii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AYJ54_05700	Uncharacterized protein. (269 aa)
	AYJ54_07730	Invasion associated locus B. (273 aa)
	AYJ54_09230	DUF1254 domain-containing protein. (194 aa)
	AYJ54_09235	DUF1214 domain-containing protein. (192 aa)
	AYJ54_10885	Uncharacterized protein. (101 aa)
	AYJ54_15490	Uncharacterized protein. (90 aa)
	AYJ54_15575	LapA_dom domain-containing protein. (134 aa)
	AYJ54_18200	OMP_b-brl domain-containing protein. (270 aa)
	AYJ54_20235	Uncharacterized protein. (356 aa)
	AYJ54_26240	Protein tyrosine phosphatase. (168 aa)
	AYJ54_28520	HIG1 domain-containing protein. (64 aa)
	AYJ54_28965	Uncharacterized protein. (396 aa)
	AYJ54_33945	Uncharacterized protein. (275 aa)
	AYJ54_35775	RDD domain-containing protein. (181 aa)
	AYJ54_39280	Uncharacterized protein. (202 aa)
	AYJ54_40350	Flagellar export protein FliJ. (139 aa)
	AYJ54_41660	Invasion associated locus B. (177 aa)
	AYJ54_41830	Uncharacterized protein. (130 aa)
	AYJ54_43100	Uncharacterized protein. (88 aa)
	AYJ54_43105	TIGR02301 family protein. (125 aa)
	AYJ54_43680	Flagellar biosynthesis protein FliO. (321 aa)
	AYJ54_46140	Uncharacterized protein. (119 aa)

Your Current Organism:

Bradyrhizobium centrolobii

NCBI taxonomy Id: 1505087
Other names: B. centrolobii, Bradyrhizobium sp. BR 10245, Bradyrhizobium sp. BR 10290, Bradyrhizobium sp. BR 10351, HAMBI:3597, strain BR 10245

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
AYJ54_05700	AYJ54_07730	Uncharacterized protein.	Invasion associated locus B.	0.763
AYJ54_05700	AYJ54_09230	Uncharacterized protein.	DUF1254 domain-containing protein.	0.770
AYJ54_05700	AYJ54_09235	Uncharacterized protein.	DUF1214 domain-containing protein.	0.741
AYJ54_05700	AYJ54_10885	Uncharacterized protein.	Uncharacterized protein.	0.762
AYJ54_05700	AYJ54_15490	Uncharacterized protein.	Uncharacterized protein.	0.740
AYJ54_05700	AYJ54_15575	Uncharacterized protein.	LapA_dom domain-containing protein.	0.698
AYJ54_05700	AYJ54_18200	Uncharacterized protein.	OMP_b-brl domain-containing protein.	0.584
AYJ54_05700	AYJ54_20235	Uncharacterized protein.	Uncharacterized protein.	0.770
AYJ54_05700	AYJ54_26240	Uncharacterized protein.	Protein tyrosine phosphatase.	0.737
AYJ54_05700	AYJ54_28520	Uncharacterized protein.	HIG1 domain-containing protein.	0.671
AYJ54_05700	AYJ54_28965	Uncharacterized protein.	Uncharacterized protein.	0.768
AYJ54_05700	AYJ54_33945	Uncharacterized protein.	Uncharacterized protein.	0.754
AYJ54_05700	AYJ54_35775	Uncharacterized protein.	RDD domain-containing protein.	0.674
AYJ54_05700	AYJ54_39280	Uncharacterized protein.	Uncharacterized protein.	0.707
AYJ54_05700	AYJ54_40350	Uncharacterized protein.	Flagellar export protein FliJ.	0.755
AYJ54_05700	AYJ54_41660	Uncharacterized protein.	Invasion associated locus B.	0.756
AYJ54_05700	AYJ54_41830	Uncharacterized protein.	Uncharacterized protein.	0.655
AYJ54_05700	AYJ54_43100	Uncharacterized protein.	Uncharacterized protein.	0.703
AYJ54_05700	AYJ54_43105	Uncharacterized protein.	TIGR02301 family protein.	0.767
AYJ54_05700	AYJ54_43680	Uncharacterized protein.	Flagellar biosynthesis protein FliO.	0.586

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