7 items (Bradyrhizobium centrolobii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AYJ54_05700	Uncharacterized protein. (269 aa)
	AYJ54_09230	DUF1254 domain-containing protein. (194 aa)
	AYJ54_09235	DUF1214 domain-containing protein. (192 aa)
	AYJ54_28965	Uncharacterized protein. (396 aa)
	AYJ54_40350	Flagellar export protein FliJ. (139 aa)
	AYJ54_43100	Uncharacterized protein. (88 aa)
	AYJ54_43105	TIGR02301 family protein. (125 aa)

Your Current Organism:

Bradyrhizobium centrolobii

NCBI taxonomy Id: 1505087
Other names: B. centrolobii, Bradyrhizobium sp. BR 10245, Bradyrhizobium sp. BR 10290, Bradyrhizobium sp. BR 10351, HAMBI:3597, strain BR 10245

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
AYJ54_05700	AYJ54_09230	Uncharacterized protein.	DUF1254 domain-containing protein.	0.770
AYJ54_05700	AYJ54_09235	Uncharacterized protein.	DUF1214 domain-containing protein.	0.741
AYJ54_05700	AYJ54_28965	Uncharacterized protein.	Uncharacterized protein.	0.768
AYJ54_05700	AYJ54_40350	Uncharacterized protein.	Flagellar export protein FliJ.	0.755
AYJ54_05700	AYJ54_43100	Uncharacterized protein.	Uncharacterized protein.	0.703
AYJ54_05700	AYJ54_43105	Uncharacterized protein.	TIGR02301 family protein.	0.767
AYJ54_09230	AYJ54_05700	DUF1254 domain-containing protein.	Uncharacterized protein.	0.770
AYJ54_09230	AYJ54_09235	DUF1254 domain-containing protein.	DUF1214 domain-containing protein.	0.953
AYJ54_09230	AYJ54_28965	DUF1254 domain-containing protein.	Uncharacterized protein.	0.771
AYJ54_09230	AYJ54_40350	DUF1254 domain-containing protein.	Flagellar export protein FliJ.	0.725
AYJ54_09230	AYJ54_43100	DUF1254 domain-containing protein.	Uncharacterized protein.	0.750
AYJ54_09230	AYJ54_43105	DUF1254 domain-containing protein.	TIGR02301 family protein.	0.773
AYJ54_09235	AYJ54_05700	DUF1214 domain-containing protein.	Uncharacterized protein.	0.741
AYJ54_09235	AYJ54_09230	DUF1214 domain-containing protein.	DUF1254 domain-containing protein.	0.953
AYJ54_09235	AYJ54_28965	DUF1214 domain-containing protein.	Uncharacterized protein.	0.710
AYJ54_09235	AYJ54_40350	DUF1214 domain-containing protein.	Flagellar export protein FliJ.	0.710
AYJ54_09235	AYJ54_43100	DUF1214 domain-containing protein.	Uncharacterized protein.	0.701
AYJ54_09235	AYJ54_43105	DUF1214 domain-containing protein.	TIGR02301 family protein.	0.767
AYJ54_28965	AYJ54_05700	Uncharacterized protein.	Uncharacterized protein.	0.768
AYJ54_28965	AYJ54_09230	Uncharacterized protein.	DUF1254 domain-containing protein.	0.771

page 1 of 3

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About