STRINGSTRING
JMA_00110 JMA_00110 JMA_00250 JMA_00250 JMA_01170 JMA_01170 JMA_01950 JMA_01950 JMA_02000 JMA_02000 JMA_03650 JMA_03650 JMA_04210 JMA_04210 JMA_05720 JMA_05720 JMA_08370 JMA_08370 JMA_11810 JMA_11810 sigI sigI JMA_16020 JMA_16020 JMA_16030 JMA_16030 JMA_17060 JMA_17060 JMA_20200 JMA_20200 sigA sigA JMA_22310 JMA_22310 JMA_22800 JMA_22800 JMA_27310 JMA_27310 JMA_30630 JMA_30630
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
JMA_00110Hypothetical protein; Belongs to the sigma-70 factor family. ECF subfamily. (174 aa)
JMA_00250Hypothetical protein. (185 aa)
JMA_01170RNA polymerase sigma70 factor; Belongs to the sigma-70 factor family. (215 aa)
JMA_01950RNA polymerase sigma70 factor; Belongs to the sigma-70 factor family. ECF subfamily. (192 aa)
JMA_02000RNA polymerase sigma factor SigW; Belongs to the sigma-70 factor family. ECF subfamily. (187 aa)
JMA_03650Hypothetical protein. (216 aa)
JMA_04210RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (172 aa)
JMA_05720Hypothetical protein; Belongs to the sigma-70 factor family. ECF subfamily. (180 aa)
JMA_08370RNA polymerase sigma factor SigB; Belongs to the sigma-70 factor family. (264 aa)
JMA_11810Hypothetical protein; Belongs to the sigma-70 factor family. ECF subfamily. (174 aa)
sigIRNA polymerase sigma factor SigI; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; Belongs to the sigma-70 factor family. SigI subfamily. (246 aa)
JMA_16020RNA polymerase sigma 70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (239 aa)
JMA_16030RNA polymerase sigma 70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (257 aa)
JMA_17060RNA polymerase sigma factor SigD; Belongs to the sigma-70 factor family. (256 aa)
JMA_20200RNA polymerase sigma factor SigX; Belongs to the sigma-70 factor family. ECF subfamily. (173 aa)
sigARNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (376 aa)
JMA_22310Hypothetical protein. (171 aa)
JMA_22800Hypothetical protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (229 aa)
JMA_27310Hypothetical protein; Belongs to the sigma-70 factor family. (218 aa)
JMA_30630Hypothetical protein. (100 aa)
Your Current Organism:
Jeotgalibacillus malaysiensis
NCBI taxonomy Id: 1508404
Other names: DSM 28777, J. malaysiensis, Jeotgalibacillus malaysiensis Yaakop et al. 2015, Jeotgalibacillus sp. D5, KCTC 33550, strain D5
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