(29 nodes) RNA Polymerase II Promoter Escape network (Aspergillus nomius)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANOM_011121	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (457 aa)
	ANOM_009629	Uncharacterized protein. (370 aa)
	ANOM_010778	Transcription initiation factor IIB. (350 aa)
	ANOM_009630	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (112 aa)
	ANOM_010497	TATA-box-binding protein. (296 aa)
	ANOM_008664	Transcription initiation factor TFIID subunit 13. (169 aa)
	ANOM_009101	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (480 aa)
	ANOM_008507	Transcription factor TFIIE complex alpha subunit. (442 aa)
	ANOM_009368	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (291 aa)
	ANOM_008206	Putative transcription factor IIIc-like protein. (631 aa)
	ANOM_007330	TATA-binding protein associated factor Taf2. (1269 aa)
	ANOM_008622	RNA polymerase II transcription factor. (629 aa)
	ANOM_008854	Serine/threonine-protein kinase KIN28; Belongs to the protein kinase superfamily. (403 aa)
	ANOM_008438	Transcription factor IIA, alpha/beta subunit family protein. (410 aa)
	ANOM_006988	Putative TFIIH complex helicase Rad3. (764 aa)
	ANOM_007804	Putative transcription factor TFIID complex 145 kDa subunit. (1166 aa)
	ANOM_006345	Putative transcription initiation factor TFIID subunit 12. (605 aa)
	ANOM_006639	Bromodomain associated domain protein. (348 aa)
	ANOM_005512	RNA polymerase II transcription factor B subunit 3. (378 aa)
	ANOM_004880	RNA polymerase II transcription factor B subunit 5. (73 aa)
	ANOM_005684	WD_REPEATS_REGION domain-containing protein. (564 aa)
	ANOM_004077	Putative transcription initiation factor TFIID subunit 7. (482 aa)
	ANOM_003036	ATP-dependent RNA helicase CHL1. (1001 aa)
	ANOM_002761	Transcription initiation factor TFIID complex subunit. (445 aa)
	ANOM_002763	Transcription initiation factor TFIID subunit beta. (353 aa)
	ANOM_002839	Transcription factor TFIIH complex subunit. (377 aa)
	ANOM_002858	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (281 aa)
	ANOM_001787	Putative cell cycle control protein TINC. (694 aa)
	ANOM_002041	Putative TFIIH complex helicase Ssl2. (824 aa)

Your Current Organism:

Aspergillus nomius

NCBI taxonomy Id: 1509407
Other names: A. nomius NRRL 13137, Aspergillus nomius NRRL 13137, Aspergillus nomius NRRL13137

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANOM_001787	ANOM_002041	A0A0L1JEN3	A0A0L1JET5	Putative cell cycle control protein TINC.	Putative TFIIH complex helicase Ssl2.	0.888
ANOM_001787	ANOM_002761	A0A0L1JEN3	A0A0L1JAD0	Putative cell cycle control protein TINC.	Transcription initiation factor TFIID complex subunit.	0.999
ANOM_001787	ANOM_002763	A0A0L1JEN3	A0A0L1JAH5	Putative cell cycle control protein TINC.	Transcription initiation factor TFIID subunit beta.	0.999
ANOM_001787	ANOM_002839	A0A0L1JEN3	A0A0L1JDG3	Putative cell cycle control protein TINC.	Transcription factor TFIIH complex subunit.	0.888
ANOM_001787	ANOM_002858	A0A0L1JEN3	A0A0L1JDI0	Putative cell cycle control protein TINC.	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]	0.998
ANOM_001787	ANOM_003036	A0A0L1JEN3	A0A0L1J8K9	Putative cell cycle control protein TINC.	ATP-dependent RNA helicase CHL1.	0.781
ANOM_001787	ANOM_004077	A0A0L1JEN3	A0A0L1J8J3	Putative cell cycle control protein TINC.	Putative transcription initiation factor TFIID subunit 7.	0.986
ANOM_001787	ANOM_005512	A0A0L1JEN3	A0A0L1J302	Putative cell cycle control protein TINC.	RNA polymerase II transcription factor B subunit 3.	0.908
ANOM_001787	ANOM_005684	A0A0L1JEN3	A0A0L1J5G9	Putative cell cycle control protein TINC.	WD_REPEATS_REGION domain-containing protein.	0.972
ANOM_001787	ANOM_006345	A0A0L1JEN3	A0A0L1J0E9	Putative cell cycle control protein TINC.	Putative transcription initiation factor TFIID subunit 12.	0.999
ANOM_001787	ANOM_006639	A0A0L1JEN3	A0A0L1J181	Putative cell cycle control protein TINC.	Bromodomain associated domain protein.	0.947
ANOM_001787	ANOM_006988	A0A0L1JEN3	A0A0L1IYU1	Putative cell cycle control protein TINC.	Putative TFIIH complex helicase Rad3.	0.881
ANOM_001787	ANOM_007330	A0A0L1JEN3	A0A0L1IWT8	Putative cell cycle control protein TINC.	TATA-binding protein associated factor Taf2.	0.999
ANOM_001787	ANOM_007804	A0A0L1JEN3	A0A0L1IZN8	Putative cell cycle control protein TINC.	Putative transcription factor TFIID complex 145 kDa subunit.	0.998
ANOM_001787	ANOM_008206	A0A0L1JEN3	A0A0L1IW04	Putative cell cycle control protein TINC.	Putative transcription factor IIIc-like protein.	0.974
ANOM_001787	ANOM_008438	A0A0L1JEN3	A0A0L1IXJ1	Putative cell cycle control protein TINC.	Transcription factor IIA, alpha/beta subunit family protein.	0.848
ANOM_001787	ANOM_008507	A0A0L1JEN3	A0A0L1IUB8	Putative cell cycle control protein TINC.	Transcription factor TFIIE complex alpha subunit.	0.873
ANOM_001787	ANOM_008622	A0A0L1JEN3	A0A0L1IX24	Putative cell cycle control protein TINC.	RNA polymerase II transcription factor.	0.888
ANOM_001787	ANOM_008664	A0A0L1JEN3	A0A0L1IRY8	Putative cell cycle control protein TINC.	Transcription initiation factor TFIID subunit 13.	0.974
ANOM_001787	ANOM_008854	A0A0L1JEN3	A0A0L1IX45	Putative cell cycle control protein TINC.	Serine/threonine-protein kinase KIN28; Belongs to the protein kinase superfamily.	0.853