(21 nodes) RNA polymerase III complex, and RNA polymerase I complex network (Aspergillus nomius)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANOM_010714	DNA-directed RNA polymerase III subunit RPC10. (76 aa)
	ANOM_010408	DNA-directed RNA polymerases I and III subunit RPAC2. (142 aa)
	ANOM_008892	Transcription factor TFIIIB component. (573 aa)
	ANOM_009314	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (355 aa)
	ANOM_008404	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (653 aa)
	ANOM_008935	Uncharacterized protein. (651 aa)
	ANOM_007986	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (144 aa)
	ANOM_008936	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (245 aa)
	ANOM_007416	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1227 aa)
	ANOM_008553	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1237 aa)
	ANOM_007558	Transcription factor TFIIIB complex subunit Brf1. (758 aa)
	ANOM_006986	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1673 aa)
	ANOM_006036	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1447 aa)
	ANOM_004749	RNA polymerase I-specific transcription initiation factor RRN3 family protein. (701 aa)
	ANOM_003861	DNA-directed RNA polymerase III subunit RPC8. (193 aa)
	ANOM_003270	DNA-directed RNA polymerase III RPC4. (604 aa)
	ANOM_003323	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (121 aa)
	ANOM_002199	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (73 aa)
	ANOM_002940	DNA-directed RNA polymerases I and III subunit RPAC1. (373 aa)
	ANOM_001826	RNA polymerase I subunit Rpa43. (416 aa)
	ANOM_000635	Uncharacterized protein. (496 aa)

Your Current Organism:

Aspergillus nomius

NCBI taxonomy Id: 1509407
Other names: A. nomius NRRL 13137, Aspergillus nomius NRRL 13137, Aspergillus nomius NRRL13137

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANOM_000635	ANOM_001826	A0A0L1JGU4	A0A0L1JEQ6	Uncharacterized protein.	RNA polymerase I subunit Rpa43.	0.999
ANOM_000635	ANOM_002199	A0A0L1JGU4	A0A0L1JB36	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.999
ANOM_000635	ANOM_002940	A0A0L1JGU4	A0A0L1JBE6	Uncharacterized protein.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.999
ANOM_000635	ANOM_003270	A0A0L1JGU4	A0A0L1JAC0	Uncharacterized protein.	DNA-directed RNA polymerase III RPC4.	0.650
ANOM_000635	ANOM_003323	A0A0L1JGU4	A0A0L1JAD4	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
ANOM_000635	ANOM_003861	A0A0L1JGU4	A0A0L1J853	Uncharacterized protein.	DNA-directed RNA polymerase III subunit RPC8.	0.650
ANOM_000635	ANOM_004749	A0A0L1JGU4	A0A0L1J650	Uncharacterized protein.	RNA polymerase I-specific transcription initiation factor RRN3 family protein.	0.992
ANOM_000635	ANOM_006036	A0A0L1JGU4	A0A0L1J1L6	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.990
ANOM_000635	ANOM_006986	A0A0L1JGU4	A0A0L1IYU9	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
ANOM_000635	ANOM_007416	A0A0L1JGU4	A0A0L1IVH2	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.977
ANOM_000635	ANOM_007986	A0A0L1JGU4	A0A0L1IUG9	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
ANOM_000635	ANOM_008404	A0A0L1JGU4	A0A0L1IRE1	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.711
ANOM_000635	ANOM_008553	A0A0L1JGU4	A0A0L1IVK1	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
ANOM_000635	ANOM_008935	A0A0L1JGU4	A0A0L1ITL9	Uncharacterized protein.	Uncharacterized protein.	0.443
ANOM_000635	ANOM_009314	A0A0L1JGU4	A0A0L1IR52	Uncharacterized protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.798
ANOM_000635	ANOM_010408	A0A0L1JGU4	A0A0L1IN72	Uncharacterized protein.	DNA-directed RNA polymerases I and III subunit RPAC2.	0.993
ANOM_000635	ANOM_010714	A0A0L1JGU4	A0A0L1IMR2	Uncharacterized protein.	DNA-directed RNA polymerase III subunit RPC10.	0.961
ANOM_001826	ANOM_000635	A0A0L1JEQ6	A0A0L1JGU4	RNA polymerase I subunit Rpa43.	Uncharacterized protein.	0.999
ANOM_001826	ANOM_002199	A0A0L1JEQ6	A0A0L1JB36	RNA polymerase I subunit Rpa43.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.999
ANOM_001826	ANOM_002940	A0A0L1JEQ6	A0A0L1JBE6	RNA polymerase I subunit Rpa43.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.999