(15 nodes) RNA polymerase core enzyme binding network (Aspergillus nomius)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANOM_003908	Uncharacterized protein. (593 aa)
	ANOM_011721	Pol II transcription elongation factor subunit Cdc73. (470 aa)
	ANOM_009829	CID domain-containing protein. (404 aa)
	ANOM_009684	Transcription factor iws1. (426 aa)
	ANOM_010249	Uncharacterized protein. (1616 aa)
	ANOM_007870	Transcription elongation factor spt4. (149 aa)
	ANOM_007703	mRNA cleavage factor complex component Pcf11. (651 aa)
	ANOM_006667	Uncharacterized protein. (557 aa)
	ANOM_008469	mRNA-capping enzyme subunit alpha; Second step of mRNA capping. Transfer of the GMP moiety of GTP to the 5'-end of RNA via an enzyme-GMP covalent reaction intermediate; Belongs to the eukaryotic GTase family. (415 aa)
	ANOM_006949	RNA polymerase-associated protein LEO1. (466 aa)
	ANOM_007046	RTR1-type domain-containing protein. (324 aa)
	ANOM_004529	RNA polymerase II transcription elongation factor Rtf1p. (439 aa)
	ANOM_006384	Putative mRNA capping enzyme alpha subunit. (379 aa)
	ANOM_004749	RNA polymerase I-specific transcription initiation factor RRN3 family protein. (701 aa)
	ANOM_004471	Transcription elongation factor S-II. (304 aa)

Your Current Organism:

Aspergillus nomius

NCBI taxonomy Id: 1509407
Other names: A. nomius NRRL 13137, Aspergillus nomius NRRL 13137, Aspergillus nomius NRRL13137

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANOM_003908	ANOM_004471	A0A0L1J8D4	A0A0L1J7M0	Uncharacterized protein.	Transcription elongation factor S-II.	0.797
ANOM_003908	ANOM_004529	A0A0L1J8D4	A0A0L1J483	Uncharacterized protein.	RNA polymerase II transcription elongation factor Rtf1p.	0.969
ANOM_003908	ANOM_006949	A0A0L1J8D4	A0A0L1IY14	Uncharacterized protein.	RNA polymerase-associated protein LEO1.	0.982
ANOM_003908	ANOM_007870	A0A0L1J8D4	A0A0L1IT22	Uncharacterized protein.	Transcription elongation factor spt4.	0.923
ANOM_003908	ANOM_009684	A0A0L1J8D4	A0A0L1INB1	Uncharacterized protein.	Transcription factor iws1.	0.630
ANOM_003908	ANOM_010249	A0A0L1J8D4	A0A0L1IRV7	Uncharacterized protein.	Uncharacterized protein.	0.980
ANOM_003908	ANOM_011721	A0A0L1J8D4	A0A0L1ILF5	Uncharacterized protein.	Pol II transcription elongation factor subunit Cdc73.	0.979
ANOM_004471	ANOM_003908	A0A0L1J7M0	A0A0L1J8D4	Transcription elongation factor S-II.	Uncharacterized protein.	0.797
ANOM_004471	ANOM_004529	A0A0L1J7M0	A0A0L1J483	Transcription elongation factor S-II.	RNA polymerase II transcription elongation factor Rtf1p.	0.896
ANOM_004471	ANOM_004749	A0A0L1J7M0	A0A0L1J650	Transcription elongation factor S-II.	RNA polymerase I-specific transcription initiation factor RRN3 family protein.	0.901
ANOM_004471	ANOM_006384	A0A0L1J7M0	A0A0L1J546	Transcription elongation factor S-II.	Putative mRNA capping enzyme alpha subunit.	0.618
ANOM_004471	ANOM_006667	A0A0L1J7M0	A0A0L1IVB0	Transcription elongation factor S-II.	Uncharacterized protein.	0.915
ANOM_004471	ANOM_006949	A0A0L1J7M0	A0A0L1IY14	Transcription elongation factor S-II.	RNA polymerase-associated protein LEO1.	0.924
ANOM_004471	ANOM_007046	A0A0L1J7M0	A0A0L1J2A9	Transcription elongation factor S-II.	RTR1-type domain-containing protein.	0.863
ANOM_004471	ANOM_007703	A0A0L1J7M0	A0A0L1ITM7	Transcription elongation factor S-II.	mRNA cleavage factor complex component Pcf11.	0.733
ANOM_004471	ANOM_007870	A0A0L1J7M0	A0A0L1IT22	Transcription elongation factor S-II.	Transcription elongation factor spt4.	0.984
ANOM_004471	ANOM_008469	A0A0L1J7M0	A0A0L1IVE5	Transcription elongation factor S-II.	mRNA-capping enzyme subunit alpha; Second step of mRNA capping. Transfer of the GMP moiety of GTP to the 5'-end of RNA via an enzyme-GMP covalent reaction intermediate; Belongs to the eukaryotic GTase family.	0.618
ANOM_004471	ANOM_009684	A0A0L1J7M0	A0A0L1INB1	Transcription elongation factor S-II.	Transcription factor iws1.	0.994
ANOM_004471	ANOM_009829	A0A0L1J7M0	A0A0L1IMT6	Transcription elongation factor S-II.	CID domain-containing protein.	0.791
ANOM_004471	ANOM_010249	A0A0L1J7M0	A0A0L1IRV7	Transcription elongation factor S-II.	Uncharacterized protein.	0.817