(14 nodes) Nonfunctional rRNA decay network (Aspergillus nomius)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANOM_010363	Endoplasmic reticulum and nuclear membrane proteinc Npl4. (903 aa)
	ANOM_010329	Exosome complex subunit Rrp46. (249 aa)
	ANOM_010020	Uncharacterized protein. (267 aa)
	ANOM_010586	Exosome component 3'-5' exonuclease. (766 aa)
	ANOM_010823	3' exoribonuclease family protein. (417 aa)
	ANOM_008737	Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (405 aa)
	ANOM_009555	Exosome complex endonuclease 2/ribosomal RNA processing protein. (292 aa)
	ANOM_007418	Ubiquitin fusion degradation protein Ufd1. (369 aa)
	ANOM_008306	3' exoribonuclease family protein (Rrp42). (386 aa)
	ANOM_005383	26S protease subunit rpt4; Belongs to the AAA ATPase family. (389 aa)
	ANOM_004365	Exosome complex exonuclease DIS3; Belongs to the RNR ribonuclease family. (1043 aa)
	ANOM_003801	Thermotolerance protein. (1286 aa)
	ANOM_004551	Exosome complex endonuclease 1. (269 aa)
	ANOM_001374	Uncharacterized protein. (884 aa)

Your Current Organism:

Aspergillus nomius

NCBI taxonomy Id: 1509407
Other names: A. nomius NRRL 13137, Aspergillus nomius NRRL 13137, Aspergillus nomius NRRL13137

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANOM_004365	ANOM_004551	A0A0L1J4I2	A0A0L1J852	Exosome complex exonuclease DIS3; Belongs to the RNR ribonuclease family.	Exosome complex endonuclease 1.	0.997
ANOM_004365	ANOM_008306	A0A0L1J4I2	A0A0L1IX60	Exosome complex exonuclease DIS3; Belongs to the RNR ribonuclease family.	3' exoribonuclease family protein (Rrp42).	0.997
ANOM_004365	ANOM_009555	A0A0L1J4I2	A0A0L1IU26	Exosome complex exonuclease DIS3; Belongs to the RNR ribonuclease family.	Exosome complex endonuclease 2/ribosomal RNA processing protein.	0.997
ANOM_004365	ANOM_010329	A0A0L1J4I2	A0A0L1IPF4	Exosome complex exonuclease DIS3; Belongs to the RNR ribonuclease family.	Exosome complex subunit Rrp46.	0.996
ANOM_004365	ANOM_010586	A0A0L1J4I2	A0A0L1IPV2	Exosome complex exonuclease DIS3; Belongs to the RNR ribonuclease family.	Exosome component 3'-5' exonuclease.	0.976
ANOM_004365	ANOM_010823	A0A0L1J4I2	A0A0L1IQV7	Exosome complex exonuclease DIS3; Belongs to the RNR ribonuclease family.	3' exoribonuclease family protein.	0.997
ANOM_004551	ANOM_004365	A0A0L1J852	A0A0L1J4I2	Exosome complex endonuclease 1.	Exosome complex exonuclease DIS3; Belongs to the RNR ribonuclease family.	0.997
ANOM_004551	ANOM_008306	A0A0L1J852	A0A0L1IX60	Exosome complex endonuclease 1.	3' exoribonuclease family protein (Rrp42).	0.999
ANOM_004551	ANOM_009555	A0A0L1J852	A0A0L1IU26	Exosome complex endonuclease 1.	Exosome complex endonuclease 2/ribosomal RNA processing protein.	0.999
ANOM_004551	ANOM_010329	A0A0L1J852	A0A0L1IPF4	Exosome complex endonuclease 1.	Exosome complex subunit Rrp46.	0.999
ANOM_004551	ANOM_010586	A0A0L1J852	A0A0L1IPV2	Exosome complex endonuclease 1.	Exosome component 3'-5' exonuclease.	0.430
ANOM_004551	ANOM_010823	A0A0L1J852	A0A0L1IQV7	Exosome complex endonuclease 1.	3' exoribonuclease family protein.	0.999
ANOM_005383	ANOM_007418	A0A0L1J2X1	A0A0L1IVP1	26S protease subunit rpt4; Belongs to the AAA ATPase family.	Ubiquitin fusion degradation protein Ufd1.	0.790
ANOM_005383	ANOM_010363	A0A0L1J2X1	A0A0L1IM74	26S protease subunit rpt4; Belongs to the AAA ATPase family.	Endoplasmic reticulum and nuclear membrane proteinc Npl4.	0.653
ANOM_005383	ANOM_010586	A0A0L1J2X1	A0A0L1IPV2	26S protease subunit rpt4; Belongs to the AAA ATPase family.	Exosome component 3'-5' exonuclease.	0.725
ANOM_007418	ANOM_005383	A0A0L1IVP1	A0A0L1J2X1	Ubiquitin fusion degradation protein Ufd1.	26S protease subunit rpt4; Belongs to the AAA ATPase family.	0.790
ANOM_007418	ANOM_010363	A0A0L1IVP1	A0A0L1IM74	Ubiquitin fusion degradation protein Ufd1.	Endoplasmic reticulum and nuclear membrane proteinc Npl4.	0.999
ANOM_008306	ANOM_004365	A0A0L1IX60	A0A0L1J4I2	3' exoribonuclease family protein (Rrp42).	Exosome complex exonuclease DIS3; Belongs to the RNR ribonuclease family.	0.997
ANOM_008306	ANOM_004551	A0A0L1IX60	A0A0L1J852	3' exoribonuclease family protein (Rrp42).	Exosome complex endonuclease 1.	0.999
ANOM_008306	ANOM_009555	A0A0L1IX60	A0A0L1IU26	3' exoribonuclease family protein (Rrp42).	Exosome complex endonuclease 2/ribosomal RNA processing protein.	0.999