STRINGSTRING
ydgJ ydgJ CBH20664.1 CBH20664.1 CBH20665.1 CBH20665.1 CBH20666.1 CBH20666.1 xylF xylF CBH20668.1 CBH20668.1 xylG xylG xylH xylH CBH20811.1 CBH20811.1 rbsA rbsA CBH20813.1 CBH20813.1 CBH20896.1 CBH20896.1 rbsA-2 rbsA-2 rbsC rbsC CBH20899.1 CBH20899.1 ydjJ ydjJ xylB xylB ald ald CBH21125.1 CBH21125.1 CBH21126.1 CBH21126.1 CBH21127.1 CBH21127.1 CBH21128.1 CBH21128.1 CBH21129.1 CBH21129.1 CBH21131.1 CBH21131.1 CBH21132.1 CBH21132.1 CBH21133.1 CBH21133.1 livF livF livG livG CBH22322.1 CBH22322.1 livH livH CBH22324.1 CBH22324.1 CBH22325.1 CBH22325.1 rbsB rbsB rbsC-2 rbsC-2 rbsA-3 rbsA-3 rbsD rbsD rbsK rbsK rbsR rbsR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ydgJPutative oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (356 aa)
CBH20664.1Periplasmic binding protein/LacI transcriptional regulator. (321 aa)
CBH20665.1Histidine kinase internal region. (503 aa)
CBH20666.1Putative Response regulator receiver protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (515 aa)
xylFD-xylose transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter. (358 aa)
CBH20668.1Ribose ABC transporter (ribose-binding protein). (363 aa)
xylGFused D-xylose transporter subunits of ABC superfamily: ATP-binding components; Function of homologous gene experimentally demonstrated in an other organism; transporter. (506 aa)
xylHD-xylose transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the binding-protein-dependent transport system permease family. (391 aa)
CBH20811.1Methylthioribose-binding protein. (364 aa)
rbsAFused D-ribose transporter subunits of ABC superfamily: ATP-binding components; Function of homologous gene experimentally demonstrated in an other organism; transporter. (504 aa)
CBH20813.1Methylthioribose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. (331 aa)
CBH20896.1Ribose operon repressor. (332 aa)
rbsA-2Fused D-ribose transporter subunits of ABC superfamily: ATP-binding components; Function of homologous gene experimentally demonstrated in an other organism; transporter. (496 aa)
rbsCD-ribose transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the binding-protein-dependent transport system permease family. (332 aa)
CBH20899.1ABC-type sugar transport system periplasmic component-like protein precursor. (331 aa)
ydjJPutative iditol dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (346 aa)
xylBXylulokinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (489 aa)
ald4, 4'-diapolycopene-dialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (488 aa)
CBH21125.1Protein of unknown function; No homology to any previously reported sequences. (309 aa)
CBH21126.1Inner-membrane translocator precursor; Belongs to the binding-protein-dependent transport system permease family. (431 aa)
CBH21127.1Inner-membrane translocator precursor; Belongs to the binding-protein-dependent transport system permease family. (347 aa)
CBH21128.1ABC transporter related. (533 aa)
CBH21129.1Homologs of previously reported genes of unknown function. (387 aa)
CBH21131.1Protein of unknown function; No homology to any previously reported sequences. (141 aa)
CBH21132.1Homologs of previously reported genes of unknown function. (202 aa)
CBH21133.1Putative Na(+)/H(+) antiporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (424 aa)
livFLeucine/isoleucine/valine transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter. (235 aa)
livGLeucine/isoleucine/valine transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter. (256 aa)
CBH22322.1Inner-membrane translocator precursor; Belongs to the binding-protein-dependent transport system permease family. (288 aa)
livHLeucine/isoleucine/valine transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the binding-protein-dependent transport system permease family. (292 aa)
CBH22324.1Extracellular ligand-binding receptor precursor. (391 aa)
CBH22325.1Protein of unknown function; No homology to any previously reported sequences. (67 aa)
rbsBD-ribose transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter. (307 aa)
rbsC-2D-ribose transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the binding-protein-dependent transport system permease family. (310 aa)
rbsA-3Fused D-ribose transporter subunits of ABC superfamily: ATP-binding components; Function of homologous gene experimentally demonstrated in an other organism; transporter. (495 aa)
rbsDPutative cytoplasmic sugar-binding protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. (136 aa)
rbsKRibokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. (298 aa)
rbsRDNA-binding transcriptional repressor of ribose metabolism; Function of homologous gene experimentally demonstrated in an other organism; regulator. (335 aa)
Your Current Organism:
Acetoanaerobium sticklandii
NCBI taxonomy Id: 1511
Other names: A. sticklandii, ATCC 12662, BCRC 14485, CCRC 14485, CCRC:14485, CCUG 9281, Clostridium sticklandii, DSM 519, NCIMB 10654, strain StadtmanHF
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