STRINGSTRING
dppB dppB yliD yliD CBH20217.1 CBH20217.1 ywjA ywjA CBH20367.1 CBH20367.1 mdlB mdlB CBH20421.1 CBH20421.1 CBH20422.1 CBH20422.1 CBH20435.1 CBH20435.1 ribD ribD CBH20645.1 CBH20645.1 oppB oppB oppC oppC phoX phoX secG secG CBH20845.1 CBH20845.1 rpoC rpoC CBH20916.1 CBH20916.1 CBH20917.1 CBH20917.1 CBH20968.1 CBH20968.1 appA appA appB appB CBH21004.1 CBH21004.1 CBH21173.1 CBH21173.1 msrA msrA trxB trxB trxA trxA secF secF secD secD tpx tpx CBH21558.1 CBH21558.1 CBH21928.1 CBH21928.1 rpoZ rpoZ arsC arsC sodA sodA CBH22070.1 CBH22070.1 yeiI yeiI ahpC ahpC CBH22200.1 CBH22200.1 CBH22201.1 CBH22201.1 ywlE ywlE rpoA rpoA secY secY CBH22649.1 CBH22649.1 mef mef CBH22558.1 CBH22558.1 CBH22523.1 CBH22523.1 secA secA CBH22387.1 CBH22387.1 CBH22386.1 CBH22386.1 appC appC oppA-2 oppA-2 dppB-2 dppB-2 yliD-2 yliD-2 tufB-2 tufB-2 secE secE rpoB rpoB tufB tufB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
dppBDipeptide transporter; Function of homologous gene experimentally demonstrated in an other organism; transporter. (315 aa)
yliDPutative peptide transporter permease subunit: membrane component of ABC superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (274 aa)
CBH20217.1Related to oligopeptide ABC transporter, oligopeptide-binding protein. (547 aa)
ywjAPutative ABC lipid transporter (ATP-binding protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (604 aa)
CBH20367.1Putative permease (Major facilitator superfamily); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (405 aa)
mdlBPutative fused ATPase and permease component of metabolite ABC transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (597 aa)
CBH20421.1Lipid A export ATP-binding/permease protein msbA (fragment). (63 aa)
CBH20422.1ABC transporter, ATP-binding/permease protein (fragment). (419 aa)
CBH20435.1Protein of unknown function; No homology to any previously reported sequences. (126 aa)
ribDFused diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. (382 aa)
CBH20645.1Exported protein of unknown function; No homology to any previously reported sequences. (1160 aa)
oppBOligopeptide transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter. (307 aa)
oppCOligopeptide transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter. (309 aa)
phoXPhosphate abc transporter, phosphate-binding protein. (332 aa)
secGPreprotein translocase subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. (75 aa)
CBH20845.1Protein of unknown function; No homology to any previously reported sequences. (428 aa)
rpoCDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1179 aa)
CBH20916.1ABC transporter, ATP-binding/permease protein. (584 aa)
CBH20917.1Multidrug resistance ABC transporter ATP-binding and permease protein. (623 aa)
CBH20968.1SEC-C motif domain protein. (168 aa)
appAOligopeptide ABC transporter (oligopeptide-binding protein). (536 aa)
appBOligopeptide ABC transporter (permease). (330 aa)
CBH21004.1Binding-protein-dependent transport systems inner membrane component precursor. (289 aa)
CBH21173.1Putative Major facilitator superfamily MFS_1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (430 aa)
msrAPeptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (191 aa)
trxBThioredoxin reductase. (314 aa)
trxAThioredoxin (Trx); Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions. (105 aa)
secFSecYEG protein translocase auxillary subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. (287 aa)
secDProtein-export membrane protein SecD precursor; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. (414 aa)
tpxPutative peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. (170 aa)
CBH21558.1FAD-dependent pyridine nucleotide-disulphide oxidoreductase. (407 aa)
CBH21928.1Homologs of previously reported genes of unknown function. (387 aa)
rpoZOmega subunit of RNA polymerase (modular protein); Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (84 aa)
arsCProtein arsC (Arsenate reductase) (Arsenical pump modifier) (Low molecular weight protein-tyrosine-phosphatase). (135 aa)
sodASuperoxide dismutase, Mn; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (203 aa)
CBH22070.1Pyridine nucleotide-disulphide oxidoreductase family protein. (417 aa)
yeiIPutative kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (372 aa)
ahpCAlkyl hydroperoxide reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (173 aa)
CBH22200.1Ferritin; Iron-storage protein. (169 aa)
CBH22201.1Homologs of previously reported genes of unknown function. (157 aa)
ywlEYwlE; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (158 aa)
rpoARNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (313 aa)
secYPreprotein translocase membrane subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. (424 aa)
CBH22649.1Tetracycline resistance determinant tetV. (404 aa)
mefMacrolide-efflux protein. (442 aa)
CBH22558.1Major facilitator superfamily MFS_1. (409 aa)
CBH22523.1Putative peroxiredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (240 aa)
secAPreprotein translocase subunit, ATPase; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. (897 aa)
CBH22387.1Extracellular solute-binding protein, family 5 precursor. (528 aa)
CBH22386.1Binding-protein-dependent transport systems inner membrane component. (328 aa)
appCOligopeptide ABC transporter (permease); Function of homologous gene experimentally demonstrated in an other organism; transporter. (300 aa)
oppA-2Oligopeptide ABC transporter, oligopeptide-binding protein. (572 aa)
dppB-2Dipeptide transporter; Function of homologous gene experimentally demonstrated in an other organism; transporter. (309 aa)
yliD-2Putative peptide transporter permease subunit: membrane component of ABC superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (304 aa)
tufB-2Protein chain elongation factor EF-Tu (duplicate of tufA); Function of homologous gene experimentally demonstrated in an other organism; factor. (397 aa)
secEPreprotein translocase subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. (68 aa)
rpoBDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1223 aa)
tufBProtein chain elongation factor EF-Tu (duplicate of tufA); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (397 aa)
Your Current Organism:
Acetoanaerobium sticklandii
NCBI taxonomy Id: 1511
Other names: A. sticklandii, ATCC 12662, BCRC 14485, CCRC 14485, CCRC:14485, CCUG 9281, Clostridium sticklandii, DSM 519, NCIMB 10654, strain StadtmanHF
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