(105 nodes) Large ribosomal subunit network (Eumeta japonica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rplE	50S ribosomal protein L5; Belongs to the universal ribosomal protein uL5 family. (179 aa)
	rplP	50S ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. (136 aa)
	rplO	50S ribosomal protein L15; Belongs to the universal ribosomal protein uL15 family. (144 aa)
	rplQ	50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family. (128 aa)
	rplV	50S ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family. (110 aa)
	rplN	50S ribosomal protein L14; Belongs to the universal ribosomal protein uL14 family. (123 aa)
	rplB	50S ribosomal protein L2. (273 aa)
	rplA	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (227 aa)
	rplK	50S ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family. (142 aa)
	rplC	50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (209 aa)
	rplD	50S ribosomal protein L4. (201 aa)
	rplM	50S ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family. (142 aa)
	rplU	50S ribosomal protein L21. (103 aa)
	EVAR_1712_1	Uncharacterized protein. (120 aa)
	MRPL18	39S ribosomal protein L18, mitochondrial. (374 aa)
	arfB	Peptidyl-tRNA hydrolase ArfB. (134 aa)
	mrpl20	39S ribosomal protein L20, mitochondrial; Belongs to the bacterial ribosomal protein bL20 family. (188 aa)
	mRpL11	39S ribosomal protein L11, mitochondrial. (155 aa)
	RpL37	60S ribosomal protein L37. (119 aa)
	RPL31	60S ribosomal protein L31. (71 aa)
	MRPL44	39S ribosomal protein L44, mitochondrial. (173 aa)
	Rpl27	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (134 aa)
	MRPL44-2	39S ribosomal protein L44, mitochondrial. (110 aa)
	rpl27a	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (188 aa)
	MRPL15	39S ribosomal protein L15, mitochondrial. (245 aa)
	Mrpl2	39S ribosomal protein L2, mitochondrial. (303 aa)
	mRpL23	39S ribosomal protein L23, mitochondrial. (149 aa)
	RpLP2	60S acidic ribosomal protein P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (114 aa)
	RpL4	60S ribosomal protein L4. (390 aa)
	rpl35	60S ribosomal protein L35. (116 aa)
	mRpL45	Probable 39S ribosomal protein L45, mitochondrial. (323 aa)
	mrpl15	39S ribosomal protein L15, mitochondrial. (294 aa)
	RTase-102	Probable RNA-directed DNA polymerase from transposon BS. (718 aa)
	mRpL55	39S ribosomal protein L55, mitochondrial. (109 aa)
	mRpL19	39S ribosomal protein L19, mitochondrial. (339 aa)
	RpLP1	60S acidic ribosomal protein P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (132 aa)
	RpL10A	60S ribosomal protein L10a. (206 aa)
	RpL11	60S ribosomal protein L11. (233 aa)
	mRpL28	39S ribosomal protein L28, mitochondrial. (264 aa)
	MRPL50	39S ribosomal protein L50, mitochondrial. (222 aa)
	rpp-2	60S acidic ribosomal protein P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (112 aa)
	MRPL4	39S ribosomal protein L4, mitochondrial. (212 aa)
	mrpl14	39S ribosomal protein L14, mitochondrial. (151 aa)
	RpL36	60S ribosomal protein L36. (123 aa)
	RpL3	60S ribosomal protein L3. (487 aa)
	Rpl12	60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (164 aa)
	mRpL41	39S ribosomal protein L41, mitochondrial. (132 aa)
	RpL19	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (200 aa)
	MRTO4	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (196 aa)
	EVAR_93288_1	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (271 aa)
	EVAR_93287_1	Uncharacterized protein. (205 aa)
	Mrpl58	Peptidyl-tRNA hydrolase ICT1, mitochondrial. (204 aa)
	RpL13A	60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (203 aa)
	Mrpl17	39S ribosomal protein L17, mitochondrial. (182 aa)
	MRPL44-3	39S ribosomal protein L44, mitochondrial. (506 aa)
	RPL35	60S ribosomal protein L35. (123 aa)
	RpL24-like	Probable ribosome biogenesis protein RLP24. (192 aa)
	rpl-7	60S ribosomal protein L7. (262 aa)
	RpL28	60S ribosomal protein L28. (141 aa)
	RpL13	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (389 aa)
	RpL15	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (112 aa)
	RpL15-2	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (127 aa)
	mRpL9	39S ribosomal protein L9, mitochondrial. (206 aa)
	RpL4-2	60S ribosomal protein L4. (434 aa)
	rplT	50S ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family. (138 aa)
	mRpL39	39S ribosomal protein L39, mitochondrial. (779 aa)
	mRpL49	Probable 39S ribosomal protein L49, mitochondrial. (192 aa)
	EVAR_43928_1	Uncharacterized protein. (130 aa)
	mRpL51	39S ribosomal protein L51, mitochondrial. (156 aa)
	RpL30	60S ribosomal protein L30. (113 aa)
	RpL34	60S ribosomal protein L34. (209 aa)
	RPL35A	60S ribosomal protein L35a. (281 aa)
	mRpL22	39S ribosomal protein L22, mitochondrial. (102 aa)
	RpL17	60S ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (186 aa)
	RpL24	60S ribosomal protein L24. (233 aa)
	MRPL38	39S ribosomal protein L38, mitochondrial. (273 aa)
	Rpl6	60S ribosomal protein L6. (340 aa)
	EVAR_37707_1	Ribosomal L1 domain-containing protein CG13096. (145 aa)
	RpL10	60S ribosomal protein L10. (219 aa)
	rplS	50S ribosomal protein L19. (115 aa)
	EVAR_48622_1	Ribosomal_L12_N domain-containing protein. (93 aa)
	MRPL54	39S ribosomal protein L54, mitochondrial. (133 aa)
	rpl22a	60S ribosomal protein L22 2. (151 aa)
	MRPL12	39S ribosomal protein L12, mitochondrial. (71 aa)
	Mrpl40	39S ribosomal protein L40, mitochondrial. (152 aa)
	Mrpl18	39S ribosomal protein L18, mitochondrial. (252 aa)
	RPL26	60S ribosomal protein L26. (148 aa)
	MRPL16	39S ribosomal protein L16, mitochondrial; Belongs to the universal ribosomal protein uL16 family. (242 aa)
	EVAR_103259_1	Uncharacterized protein. (81 aa)
	Rpl23a	60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (292 aa)
	mRpL32	39S ribosomal protein L32, mitochondrial. (88 aa)
	mRpL24	Probable 39S ribosomal protein L24, mitochondrial; Belongs to the universal ribosomal protein uL24 family. (252 aa)
	Mrpl46	39S ribosomal protein L46, mitochondrial. (168 aa)
	RpL9	60S ribosomal protein L9. (342 aa)
	RpL40	Ubiquitin-60S ribosomal protein L40. (180 aa)
	MRPL47	39S ribosomal protein L47, mitochondrial. (460 aa)
	Mrpl3	39S ribosomal protein L3, mitochondrial. (343 aa)
	RpL8	60S ribosomal protein L8. (257 aa)
	mRpL11-2	39S ribosomal protein L11, mitochondrial. (121 aa)
	RpL44	60S ribosomal protein L44; Belongs to the eukaryotic ribosomal protein eL42 family. (125 aa)
	RpLP0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (317 aa)
	MRPS30	28S ribosomal protein S30, mitochondrial. (541 aa)
	RpL18A	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (177 aa)
	mRpL10	39S ribosomal protein L10, mitochondrial. (158 aa)
	Mrpl4	39S ribosomal protein L4, mitochondrial. (173 aa)

Your Current Organism:

Eumeta japonica

NCBI taxonomy Id: 151549
Other names: E. japonica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EVAR_103259_1	EVAR_1712_1	A0A4C1Y8L7	A0A4C1SLS3	Uncharacterized protein.	Uncharacterized protein.	0.957
EVAR_103259_1	EVAR_43928_1	A0A4C1Y8L7	A0A4C1WRJ2	Uncharacterized protein.	Uncharacterized protein.	0.990
EVAR_103259_1	EVAR_48622_1	A0A4C1Y8L7	A0A4C1XXE7	Uncharacterized protein.	Ribosomal_L12_N domain-containing protein.	0.957
EVAR_103259_1	EVAR_93287_1	A0A4C1Y8L7	A0A4C1UTD4	Uncharacterized protein.	Uncharacterized protein.	0.418
EVAR_103259_1	EVAR_93288_1	A0A4C1Y8L7	A0A4C1USQ1	Uncharacterized protein.	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.418
EVAR_103259_1	MRPL12	A0A4C1Y8L7	A0A4C1Y1H8	Uncharacterized protein.	39S ribosomal protein L12, mitochondrial.	0.957
EVAR_103259_1	MRPL15	A0A4C1Y8L7	A0A4C1SYK4	Uncharacterized protein.	39S ribosomal protein L15, mitochondrial.	0.963
EVAR_103259_1	MRPL16	A0A4C1Y8L7	A0A4C1Y883	Uncharacterized protein.	39S ribosomal protein L16, mitochondrial; Belongs to the universal ribosomal protein uL16 family.	0.945
EVAR_103259_1	MRPL18	A0A4C1Y8L7	A0A4C1SMM7	Uncharacterized protein.	39S ribosomal protein L18, mitochondrial.	0.898
EVAR_103259_1	MRPL38	A0A4C1Y8L7	A0A4C1XFZ9	Uncharacterized protein.	39S ribosomal protein L38, mitochondrial.	0.863
EVAR_103259_1	MRPL4	A0A4C1Y8L7	A0A4C1U3N3	Uncharacterized protein.	39S ribosomal protein L4, mitochondrial.	0.945
EVAR_103259_1	MRPL44	A0A4C1Y8L7	A0A4C1SV58	Uncharacterized protein.	39S ribosomal protein L44, mitochondrial.	0.919
EVAR_103259_1	MRPL44-2	A0A4C1Y8L7	A0A4C1SX70	Uncharacterized protein.	39S ribosomal protein L44, mitochondrial.	0.919
EVAR_103259_1	MRPL44-3	A0A4C1Y8L7	A0A4C1VLC2	Uncharacterized protein.	39S ribosomal protein L44, mitochondrial.	0.919
EVAR_103259_1	MRPL47	A0A4C1Y8L7	A0A4C1ZB67	Uncharacterized protein.	39S ribosomal protein L47, mitochondrial.	0.994
EVAR_103259_1	MRPL50	A0A4C1Y8L7	A0A4C1TT07	Uncharacterized protein.	39S ribosomal protein L50, mitochondrial.	0.971
EVAR_103259_1	MRPL54	A0A4C1Y8L7	A0A4C1XZ47	Uncharacterized protein.	39S ribosomal protein L54, mitochondrial.	0.987
EVAR_103259_1	MRPS30	A0A4C1Y8L7	A0A4C1ZXI2	Uncharacterized protein.	28S ribosomal protein S30, mitochondrial.	0.972
EVAR_103259_1	Mrpl17	A0A4C1Y8L7	A0A4C1V7R3	Uncharacterized protein.	39S ribosomal protein L17, mitochondrial.	0.985
EVAR_103259_1	Mrpl18	A0A4C1Y8L7	A0A4C1Y6E4	Uncharacterized protein.	39S ribosomal protein L18, mitochondrial.	0.898