(28 nodes) Organelle inner membrane network (Streptomyces sp. NRRLS4)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KPC82388.1	Cobalamin biosynthesis protein CobN; Derived by automated computational analysis using gene prediction method: Protein Homology. (1199 aa)
	KPC78145.1	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (600 aa)
	KPC78521.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (462 aa)
	KPC79271.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (630 aa)
	KPC79237.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (523 aa)
	KPC79080.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (194 aa)
	KPC79485.1	PTS alpha-glucoside transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology. (503 aa)
	KPC79355.1	Drug:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
	KPC79342.1	NADH:ubiquinone oxidoreductase subunit L; Derived by automated computational analysis using gene prediction method: Protein Homology. (631 aa)
	KPC79939.1	Oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)
	KPC79991.1	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (666 aa)
	KPC80576.1	PTS maltose transporter subunit IICB; Derived by automated computational analysis using gene prediction method: Protein Homology. (532 aa)
	KPC81118.1	Drug:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)
	KPC80865.1	Hyaluronate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)
	KPC81323.1	PTS sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (77 aa)
	KPC81322.1	PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)
	KPC81321.1	PTS sugar transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology. (421 aa)
	KPC81541.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	KPC84485.1	Phage-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	KPC85074.1	Amidinotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	KPC84787.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (641 aa)
	KPC84988.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (1262 aa)
	KPC83922.1	Choline oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (523 aa)
	KPC83942.1	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
	KPC83538.1	Amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (563 aa)
	KPC82667.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (623 aa)
	KPC81992.1	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
	KPC82082.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)

Your Current Organism:

Streptomyces sp. NRRLS4

NCBI taxonomy Id: 1519471
Other names: S. sp. NRRL S-4, Streptomyces sp. NRRL S-4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KPC78521.1	KPC82388.1	ADK82_31210	ADK82_13935	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalamin biosynthesis protein CobN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
KPC79342.1	KPC79991.1	ADK82_24670	ADK82_21135	NADH:ubiquinone oxidoreductase subunit L; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
KPC79355.1	KPC82388.1	ADK82_24740	ADK82_13935	Drug:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalamin biosynthesis protein CobN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
KPC79485.1	KPC80576.1	ADK82_25470	ADK82_20805	PTS alpha-glucoside transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS maltose transporter subunit IICB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.852
KPC79485.1	KPC81321.1	ADK82_25470	ADK82_17020	PTS alpha-glucoside transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS sugar transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
KPC79485.1	KPC81322.1	ADK82_25470	ADK82_17025	PTS alpha-glucoside transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
KPC79485.1	KPC81323.1	ADK82_25470	ADK82_17030	PTS alpha-glucoside transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.792
KPC79939.1	KPC82388.1	ADK82_23910	ADK82_13935	Oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalamin biosynthesis protein CobN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
KPC79991.1	KPC79342.1	ADK82_21135	ADK82_24670	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH:ubiquinone oxidoreductase subunit L; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
KPC80576.1	KPC79485.1	ADK82_20805	ADK82_25470	PTS maltose transporter subunit IICB; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS alpha-glucoside transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.852
KPC80576.1	KPC81321.1	ADK82_20805	ADK82_17020	PTS maltose transporter subunit IICB; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS sugar transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.633
KPC80576.1	KPC81322.1	ADK82_20805	ADK82_17025	PTS maltose transporter subunit IICB; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
KPC80576.1	KPC81323.1	ADK82_20805	ADK82_17030	PTS maltose transporter subunit IICB; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.591
KPC80865.1	KPC82388.1	ADK82_18260	ADK82_13935	Hyaluronate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalamin biosynthesis protein CobN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
KPC81118.1	KPC82388.1	ADK82_19695	ADK82_13935	Drug:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalamin biosynthesis protein CobN; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
KPC81321.1	KPC79485.1	ADK82_17020	ADK82_25470	PTS sugar transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS alpha-glucoside transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
KPC81321.1	KPC80576.1	ADK82_17020	ADK82_20805	PTS sugar transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS maltose transporter subunit IICB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.633
KPC81321.1	KPC81322.1	ADK82_17020	ADK82_17025	PTS sugar transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
KPC81321.1	KPC81323.1	ADK82_17020	ADK82_17030	PTS sugar transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968
KPC81322.1	KPC79485.1	ADK82_17025	ADK82_25470	PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS alpha-glucoside transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768