(33 nodes) Signal transduction histidine kinase, dimerisation/phosphoacceptor domain, and Metal-dependent hydrolase HDOD network (Clostridium beijerinckii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJG96712.2	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)
	AJG97063.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (682 aa)
	AJG97231.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
	AJG97398.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (781 aa)
	divJ	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (636 aa)
	phoR_4	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (671 aa)
	AJG98370.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (613 aa)
	AJG98983.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (644 aa)
	AJG99026.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (1076 aa)
	rpfC_2	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1032 aa)
	AJG99325.2	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (433 aa)
	AJG99326.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)
	AJG99327.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)
	AJG99328.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (423 aa)
	AJG99453.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1210 aa)
	AJG99456.1	Diguanylate cyclase response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
	AJG99568.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (821 aa)
	AJG99579.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (951 aa)
	srrA_6	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	AJG99838.2	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
	AJG99842.1	Response regulator receiver protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)
	AJH00020.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (669 aa)
	AJH00024.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (327 aa)
	AJH00025.2	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (420 aa)
	AJH00026.2	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (668 aa)
	AJH01055.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (133 aa)
	AJH01056.2	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (502 aa)
	AJH01546.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (568 aa)
	AJH01547.1	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (649 aa)
	AJH01751.1	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (800 aa)
	AJH01883.1	Response regulator receiver protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)
	AJH01890.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (490 aa)
	AMK50470.1	Signal transduction protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)

Your Current Organism:

Clostridium beijerinckii

NCBI taxonomy Id: 1520
Other names: ATCC 25752, BCRC 14488, C. beijerinckii, CCUG 56442, CIP 104308, Clostridium rubrum, Clostridium sp. H18, DSM 791, LMG 5716, LMG:5716, NCIMB 9362, NCTC 13035

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJG96712.2	AJG97063.1	LF65_00016	LF65_00414	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.440
AJG96712.2	AJG97231.1	LF65_00016	LF65_00595	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907
AJG96712.2	AJG97398.1	LF65_00016	LF65_00771	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.824
AJG96712.2	AJG98370.1	LF65_00016	LF65_01767	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
AJG96712.2	AJG98983.1	LF65_00016	LF65_02397	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
AJG96712.2	AJG99026.1	LF65_00016	LF65_02443	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945
AJG96712.2	AJG99325.2	LF65_00016	LF65_02752	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
AJG96712.2	AJG99326.1	LF65_00016	LF65_02753	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.677
AJG96712.2	AJG99327.1	LF65_00016	LF65_02754	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
AJG96712.2	AJG99328.1	LF65_00016	LF65_02755	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
AJG96712.2	AJG99453.1	LF65_00016	LF65_02883	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.947
AJG96712.2	AJG99456.1	LF65_00016	LF65_02886	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
AJG96712.2	AJG99568.1	LF65_00016	LF65_02999	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
AJG96712.2	AJG99579.1	LF65_00016	LF65_03010	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
AJG96712.2	AJG99838.2	LF65_00016	LF65_03275	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.756
AJG96712.2	AJG99842.1	LF65_00016	LF65_03279	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Response regulator receiver protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.474
AJG96712.2	AJH00020.1	LF65_00016	LF65_03463	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822
AJG96712.2	AJH00024.1	LF65_00016	LF65_03467	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.824
AJG96712.2	AJH00025.2	LF65_00016	LF65_03468	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.888
AJG96712.2	AJH00026.2	LF65_00016	LF65_03469	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.825

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