(21 nodes) Mixed, incl. Biotin-lipoyl like, and MacB-like periplasmic core domain network (Clostridium beijerinckii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJG96951.1	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (478 aa)
	macB_1	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
	macB_2	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (423 aa)
	AJG97828.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (659 aa)
	AJG98547.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)
	AJG98548.1	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology. (491 aa)
	AJG98549.2	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
	AJG98550.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (500 aa)
	mdtA_2	Efflux transporter periplasmic adaptor subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (420 aa)
	AJG99113.1	Acriflavin resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1030 aa)
	AJG99154.1	Efflux transporter periplasmic adaptor subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (365 aa)
	AJG99155.1	Multidrug transporter AcrB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1041 aa)
	AMK50390.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (445 aa)
	AJG99182.2	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)
	AJG99183.1	Efflux transporter periplasmic adaptor subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (403 aa)
	AJG99184.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1028 aa)
	AJH00196.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1044 aa)
	AJH00197.1	Efflux transporter periplasmic adaptor subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (403 aa)
	AJH00198.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (445 aa)
	czcB_2	Efflux transporter periplasmic adaptor subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (327 aa)
	AJH01792.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (655 aa)

Your Current Organism:

Clostridium beijerinckii

NCBI taxonomy Id: 1520
Other names: ATCC 25752, BCRC 14488, C. beijerinckii, CCUG 56442, CIP 104308, Clostridium rubrum, Clostridium sp. H18, DSM 791, LMG 5716, LMG:5716, NCIMB 9362, NCTC 13035

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJG96951.1	AJG97828.1	LF65_00275	LF65_01214	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
AJG96951.1	AJG98547.1	LF65_00275	LF65_01949	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.605
AJG96951.1	AJG98549.2	LF65_00275	LF65_01951	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AJG96951.1	AJG98550.1	LF65_00275	LF65_01952	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
AJG96951.1	AJG99113.1	LF65_00275	LF65_02531	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acriflavin resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.523
AJG96951.1	AJG99182.2	LF65_00275	LF65_02609	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.605
AJG96951.1	AJG99184.1	LF65_00275	LF65_02611	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.543
AJG96951.1	AJH00196.1	LF65_00275	LF65_03639	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.547
AJG96951.1	AJH00198.1	LF65_00275	LF65_03641	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.605
AJG96951.1	AJH01792.1	LF65_00275	LF65_05267	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
AJG96951.1	AMK50390.1	LF65_00275	LF65_02581	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.605
AJG96951.1	czcB_2	LF65_00275	LF65_04612	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Efflux transporter periplasmic adaptor subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.424
AJG96951.1	macB_1	LF65_00275	LF65_00276	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
AJG96951.1	macB_2	LF65_00275	LF65_00277	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
AJG96951.1	mdtA_2	LF65_00275	LF65_02530	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Efflux transporter periplasmic adaptor subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.420
AJG97828.1	AJG96951.1	LF65_01214	LF65_00275	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
AJG97828.1	AJG98547.1	LF65_01214	LF65_01949	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.672
AJG97828.1	AJG98548.1	LF65_01214	LF65_01950	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709
AJG97828.1	AJG98549.2	LF65_01214	LF65_01951	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
AJG97828.1	AJG98550.1	LF65_01214	LF65_01952	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.802

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