(47 nodes) Flavin adenine dinucleotide binding network (Clostridium beijerinckii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pyrK_1	NAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	AJG96816.1	Nitrogen fixation protein NifR; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (321 aa)
	AJG96932.1	Acetolactate synthase catalytic subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (557 aa)
	AJG97016.1	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)
	glcD	2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (467 aa)
	AJG97025.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
	acrA_2	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
	AJG97364.2	NAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	AJG97487.1	Sulfite reductase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	pyrK	Dihydroorotate dehydrogenase electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+). (247 aa)
	AJG98150.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (163 aa)
	AJG98552.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)
	mnmG_1	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (425 aa)
	AJG98692.1	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (425 aa)
	AJG98743.1	Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
	acdA_1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
	AJG98795.1	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
	AJG98980.1	Diguanylate cyclase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (318 aa)
	AJG98997.1	4-hydroxybutyryl-CoA dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (484 aa)
	hydG-like	NAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	AJG99060.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)
	AJG99098.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sulfur carrier protein TusA family. (828 aa)
	AJG99144.1	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	AJG99146.1	2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (475 aa)
	AJG99147.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
	AJG99160.1	Acetolactate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family. (556 aa)
	AJG99416.1	Acetolactate synthase catalytic subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (560 aa)
	AJG99422.1	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GMC oxidoreductase family. (523 aa)
	AJG99437.1	Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)
	AJG99923.1	Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)
	AJG99945.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (566 aa)
	AJH00063.1	Alkyl hydroperoxide reductase subunit F; Derived by automated computational analysis using gene prediction method: Protein Homology. (509 aa)
	AJH00150.1	NAD-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	AJH00367.1	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology. (445 aa)
	AJH00495.1	FAD-linked oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)
	AJH00663.1	Iron-sulfur protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (460 aa)
	AJH00790.1	FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (456 aa)
	AJH01006.1	FAD-linked oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (457 aa)
	AJH01030.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (430 aa)
	AJH01054.1	NADH oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)
	AJH01543.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (844 aa)
	fprA1_3	Flavoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
	AJH01598.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
	murB	UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. (304 aa)
	mnmG	tRNA uridine 5-carboxymethylaminomethyl modification protein; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. (626 aa)
	AMK50422.1	Diguanylate cyclase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (321 aa)
	AMK50424.1	Flavodoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)

Your Current Organism:

Clostridium beijerinckii

NCBI taxonomy Id: 1520
Other names: ATCC 25752, BCRC 14488, C. beijerinckii, CCUG 56442, CIP 104308, Clostridium rubrum, Clostridium sp. H18, DSM 791, LMG 5716, LMG:5716, NCIMB 9362, NCTC 13035

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJG96932.1	AJG99098.1	LF65_00256	LF65_02516	Acetolactate synthase catalytic subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sulfur carrier protein TusA family.	0.483
AJG96932.1	AJG99945.1	LF65_00256	LF65_03383	Acetolactate synthase catalytic subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.476
AJG97016.1	AJG97025.1	LF65_00347	LF65_00356	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907
AJG97016.1	AJG98692.1	LF65_00347	LF65_02100	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.647
AJG97016.1	AJG99146.1	LF65_00347	LF65_02571	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
AJG97016.1	AJG99147.1	LF65_00347	LF65_02572	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
AJG97016.1	AJH00495.1	LF65_00347	LF65_03947	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-linked oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.589
AJG97016.1	AJH00790.1	LF65_00347	LF65_04250	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.589
AJG97016.1	AJH01006.1	LF65_00347	LF65_04468	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-linked oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.589
AJG97016.1	AJH01598.1	LF65_00347	LF65_05070	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AJG97016.1	acdA_1	LF65_00347	LF65_02207	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AJG97016.1	glcD	LF65_00347	LF65_00348	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
AJG97025.1	AJG97016.1	LF65_00356	LF65_00347	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907
AJG97025.1	AJG98795.1	LF65_00356	LF65_02209	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935
AJG97025.1	AJG98997.1	LF65_00356	LF65_02412	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxybutyryl-CoA dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
AJG97025.1	AJG99144.1	LF65_00356	LF65_02569	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
AJG97025.1	AJH01598.1	LF65_00356	LF65_05070	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
AJG97025.1	acdA_1	LF65_00356	LF65_02207	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJG97025.1	acrA_2	LF65_00356	LF65_00358	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
AJG97487.1	AJG99098.1	LF65_00862	LF65_02516	Sulfite reductase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sulfur carrier protein TusA family.	0.441

page 1 of 7

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About