STRINGSTRING
sbcD sbcD AMK50523.1 AMK50523.1 LF65_06970 LF65_06970 AMK50497.1 AMK50497.1 AMK50535.1 AMK50535.1 AMK50429.1 AMK50429.1 AJH00588.1 AJH00588.1 AJH00564.1 AJH00564.1 AJH00541.1 AJH00541.1 AJH00539.1 AJH00539.1 yjcF yjcF kptA kptA AJH00406.1 AJH00406.1 AJH00401.1 AJH00401.1 AJH00369.1 AJH00369.1 AJH00333.1 AJH00333.1 AJH00321.1 AJH00321.1 AJH00319.1 AJH00319.1 LF65_03722 LF65_03722 LF65_03663 LF65_03663 AJH00194.1 AJH00194.1 AJH00108.1 AJH00108.1 AJH00106.1 AJH00106.1 AJH00010.1 AJH00010.1 AJH00006.1 AJH00006.1 pkn1 pkn1 AJG99977.1 AJG99977.1 AJG99974.1 AJG99974.1 AJG99950.1 AJG99950.1 dsbD dsbD trxA_3 trxA_3 fieF_2 fieF_2 AJG99882.2 AJG99882.2 AJG99833.1 AJG99833.1 AJG99824.1 AJG99824.1 AJG99765.1 AJG99765.1 AJG99667.1 AJG99667.1 AJG99651.1 AJG99651.1 LF65_03040 LF65_03040 selO selO AJG99586.1 AJG99586.1 AJG99555.1 AJG99555.1 AJG99511.1 AJG99511.1 AJG99481.1 AJG99481.1 AJG99439.1 AJG99439.1 AJG99431.1 AJG99431.1 AJG99420.1 AJG99420.1 AJG99386.1 AJG99386.1 AJG99376.1 AJG99376.1 AJG99305.1 AJG99305.1 AJG99300.1 AJG99300.1 gldA gldA AJG99252.1 AJG99252.1 AJG99172.1 AJG99172.1 AJG99147.1 AJG99147.1 AJG99144.1 AJG99144.1 AJG99138.1 AJG99138.1 AJG99069.1 AJG99069.1 AJG99065.1 AJG99065.1 leuA_4 leuA_4 AJG99007.1 AJG99007.1 AJG99000.2 AJG99000.2 AJG98795.1 AJG98795.1 acdA_1 acdA_1 AJG98774.1 AJG98774.1 AJG98769.2 AJG98769.2 AJG98768.1 AJG98768.1 nifH-2 nifH-2 AJG98743.1 AJG98743.1 AJG98736.1 AJG98736.1 AJG98728.1 AJG98728.1 AJG98706.1 AJG98706.1 hydA_1 hydA_1 bioB bioB AJG98608.1 AJG98608.1 AJG98607.1 AJG98607.1 AJG98606.1 AJG98606.1 kdgK_2 kdgK_2 AJG98535.1 AJG98535.1 rbn_2 rbn_2 AJG98445.1 AJG98445.1 rplT rplT AJG98268.1 AJG98268.1 AJG98228.1 AJG98228.1 AJG98215.1 AJG98215.1 AJG98164.1 AJG98164.1 AJG98107.1 AJG98107.1 AJG98094.1 AJG98094.1 iscS_2 iscS_2 AJG98035.1 AJG98035.1 hemA hemA AJG98000.1 AJG98000.1 AJG97945.1 AJG97945.1 AJG97920.1 AJG97920.1 yrrK yrrK iscS iscS AJG97833.2 AJG97833.2 AJG97743.1 AJG97743.1 purD purD purF purF AJG97707.1 AJG97707.1 ychF ychF AJG97643.1 AJG97643.1 AJG97621.1 AJG97621.1 AJG97610.1 AJG97610.1 LF65_00971 LF65_00971 ybeY ybeY AJG97522.1 AJG97522.1 trxA_1 trxA_1 AJG97469.1 AJG97469.1 AJG97468.1 AJG97468.1 AJG97461.1 AJG97461.1 nifH nifH mdeA_1 mdeA_1 AJG97311.1 AJG97311.1 nth nth AJG97278.1 AJG97278.1 nfo nfo AJG97242.1 AJG97242.1 nadD nadD AJG97181.1 AJG97181.1 AJG97177.1 AJG97177.1 AJG97167.2 AJG97167.2 AJG97162.1 AJG97162.1 ispE ispE AJG97029.1 AJG97029.1 mmgB mmgB acrA_2 acrA_2 AJG97025.1 AJG97025.1 AJG97016.1 AJG97016.1 AJG97011.1 AJG97011.1 bioB_1 bioB_1 AJG96939.1 AJG96939.1 leuA_2 leuA_2 truA truA AJG96888.1 AJG96888.1 adk adk rplP rplP rplV rplV mrnC mrnC AJG96836.1 AJG96836.1 AJG96833.1 AJG96833.1 AJG96825.1 AJG96825.1 fhs fhs serC serC aksA aksA AMK50417.1 AMK50417.1 AMK50416.1 AMK50416.1 LF65_06050 LF65_06050 AMK50367.1 AMK50367.1 fieF_1 fieF_1 AMK50347.1 AMK50347.1 AMK50343.1 AMK50343.1 AJH02248.1 AJH02248.1 yycJ yycJ pdxS pdxS AJH02210.1 AJH02210.1 puuR_3 puuR_3 kdgK_3 kdgK_3 tadA tadA AJH02080.1 AJH02080.1 tcdA_1 tcdA_1 AJH02034.1 AJH02034.1 AJH02003.1 AJH02003.1 tktA_3 tktA_3 AJH01951.1 AJH01951.1 AJH01920.1 AJH01920.1 AJH01879.1 AJH01879.1 AJH01868.1 AJH01868.1 AJH01860.1 AJH01860.1 AJH01849.1 AJH01849.1 AJH01818.1 AJH01818.1 AJH01800.1 AJH01800.1 AJH01713.1 AJH01713.1 AJH01671.1 AJH01671.1 iolC iolC AJH01598.1 AJH01598.1 AJH01596.1 AJH01596.1 argB argB argC argC AJH01538.1 AJH01538.1 AJH01391.1 AJH01391.1 phnW phnW AJH01378.1 AJH01378.1 AJH01326.1 AJH01326.1 AJH01293.1 AJH01293.1 AJH01244.2 AJH01244.2 AJH01220.1 AJH01220.1 AJH01148.1 AJH01148.1 AJH01133.1 AJH01133.1 AJH01026.1 AJH01026.1 AJH00978.1 AJH00978.1 AJH00926.1 AJH00926.1 AJH00914.1 AJH00914.1 AJH00905.1 AJH00905.1 AJH00844.2 AJH00844.2 AJH00788.1 AJH00788.1 AJH00776.1 AJH00776.1 AJH00677.1 AJH00677.1 AJH00666.1 AJH00666.1 AJH00655.1 AJH00655.1 AJH00638.1 AJH00638.1 LF65_04084 LF65_04084
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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sbcDExonuclease sbcCD subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (409 aa)
AMK50523.1Group II intron reverse transcriptase/maturase; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)
LF65_06970Cro/Cl family transcriptional regulator; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (602 aa)
AMK50497.12-dehydro-3-deoxygluconokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
AMK50535.1Spermidine/putrescine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
AMK50429.1Phospholipid methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (172 aa)
AJH00588.13-beta hydroxysteroid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
AJH00564.1Group II intron reverse transcriptase/maturase; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)
AJH00541.1Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
AJH00539.1O-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology. (434 aa)
yjcFGCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)
kptARNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase. (184 aa)
AJH00406.1Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
AJH00401.1Magnesium transporter MgtE; Derived by automated computational analysis using gene prediction method: Protein Homology. (418 aa)
AJH00369.1Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)
AJH00333.1GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
AJH00321.1NADH pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
AJH00319.1Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (296 aa)
LF65_03722Pyridoxamine 5-phosphate oxidase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa)
LF65_03663Serine hydrolase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
AJH00194.1Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
AJH00108.1DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (887 aa)
AJH00106.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
AJH00010.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
AJH00006.1Pirin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pirin family. (233 aa)
pkn1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
AJG99977.1Thioredoxin peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)
AJG99974.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (158 aa)
AJG99950.1Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (444 aa)
dsbDCytochrome C biogenesis protein ResB; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
trxA_3Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thioredoxin family. (105 aa)
fieF_2Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (298 aa)
AJG99882.2Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
AJG99833.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
AJG99824.1NADPH:quinone reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (345 aa)
AJG99765.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (135 aa)
AJG99667.1RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (585 aa)
AJG99651.1Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (92 aa)
LF65_03040Hypothetical protein; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (94 aa)
selOHypothetical protein; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family. (490 aa)
AJG99586.1Group II intron reverse transcriptase/maturase; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)
AJG99555.16-pyruvoyl tetrahydrobiopterin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
AJG99511.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (432 aa)
AJG99481.1Amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (578 aa)
AJG99439.1Disulfide bond formation protein DsbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
AJG99431.1Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
AJG99420.1Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1085 aa)
AJG99386.1Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1057 aa)
AJG99376.1Pirin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pirin family. (338 aa)
AJG99305.1GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa)
AJG99300.1AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (371 aa)
gldAGlycerol dehydrogenase; Forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; Derived by automated computational analysis using gene prediction method: Protein Homology. (363 aa)
AJG99252.1Cysteine desulfurase DndA; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
AJG99172.1Alanine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
AJG99147.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
AJG99144.1Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
AJG99138.1Group II intron reverse transcriptase/maturase; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)
AJG99069.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
AJG99065.1Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)
leuA_42-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily. (667 aa)
AJG99007.1Arsenical pump-driving ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (582 aa)
AJG99000.24-hydroxybutyrate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (433 aa)
AJG98795.1Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
acdA_1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
AJG98774.1Patatin; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
AJG98769.2Homocitrate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the alpha-IPM synthase/homocitrate synthase family. (250 aa)
AJG98768.1Isopropylmalate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)
nifH-2Nitrogenase reductase; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. (273 aa)
AJG98743.1Molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
AJG98736.1Reactive intermediate/imine deaminase; Has endoribonuclease activity on mRNA; Derived by automated computational analysis using gene prediction method: Protein Homology. (125 aa)
AJG98728.1Phenylhydantoinase; Catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; Derived by automated computational analysis using gene prediction method: Protein Homology. (458 aa)
AJG98706.1MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
hydA_1Hydantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (455 aa)
bioBBiotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. (320 aa)
AJG98608.1Fe-S cluster assembly protein SufD; Derived by automated computational analysis using gene prediction method: Protein Homology. (365 aa)
AJG98607.1Fe-S cluster assembly protein SufB; Derived by automated computational analysis using gene prediction method: Protein Homology. (469 aa)
AJG98606.1Fe-S cluster assembly ATPase SufC; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
kdgK_22-dehydro-3-deoxygluconokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
AJG98535.1DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)
rbn_2Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (308 aa)
AJG98445.1Farnesyl-diphosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family. (289 aa)
rplT50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (119 aa)
AJG98268.1Group II intron reverse transcriptase/maturase; Derived by automated computational analysis using gene prediction method: Protein Homology. (512 aa)
AJG98228.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (372 aa)
AJG98215.1Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)
AJG98164.1Beta-lysine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
AJG98107.1MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
AJG98094.1Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology. (393 aa)
iscS_2Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)
AJG98035.1Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
hemAglutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (401 aa)
AJG98000.1DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)
AJG97945.1Bifunctional riboflavin kinase/FMN adenylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribF family. (311 aa)
AJG97920.1Ribosome biogenesis GTPase YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. (287 aa)
yrrKCrossover junction endodeoxyribonuclease RuvA; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (138 aa)
iscSCysteine desulfurase NifS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. (393 aa)
AJG97833.2Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
AJG97743.1Beta-ketoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. (411 aa)
purDPhosphoribosylamine--glycine ligase; Catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GARS family. (416 aa)
purFAmidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine. (471 aa)
AJG97707.1ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (870 aa)
ychFGTP-binding protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (365 aa)
AJG97643.1DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (979 aa)
AJG97621.1UDP-N-acetylmuramyl peptide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)
AJG97610.1Group II intron reverse transcriptase/maturase; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)
LF65_00971XRE family transcriptional regulator; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)
ybeYrRNA maturation RNase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (167 aa)
AJG97522.1ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (839 aa)
trxA_1Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thioredoxin family. (102 aa)
AJG97469.1O-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)
AJG97468.1Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)
AJG97461.1Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)
nifHNitrogenase reductase; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. (284 aa)
mdeA_1O-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology. (432 aa)
AJG97311.1O-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)
nthEndonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (210 aa)
AJG97278.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)
nfoEndonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. (277 aa)
AJG97242.1Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
nadDNicotinic acid mononucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (204 aa)
AJG97181.1Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)
AJG97177.1Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)
AJG97167.22-keto-3-deoxygluconate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)
AJG97162.1Cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. (155 aa)
ispE4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (280 aa)
AJG97029.18-oxoguanine DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
mmgB3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
acrA_2Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
AJG97025.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
AJG97016.1Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)
AJG97011.1ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (887 aa)
bioB_1[FeFe] hydrogenase H-cluster radical SAM maturase HydE; Catalyzes the formation of biotin from dethiobiotin and sulfur; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)
AJG96939.1Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
leuA_2Transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the alpha-IPM synthase/homocitrate synthase family. (531 aa)
truAPseudouridine synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (244 aa)
AJG96888.1LSU ribosomal protein L14E; Derived by automated computational analysis using gene prediction method: Protein Homology. (93 aa)
adkAdenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. (216 aa)
rplP50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (144 aa)
rplV50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (111 aa)
mrnCMini-ribonuclease 3; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. (137 aa)
AJG96836.1ATP--guanido phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
AJG96833.1Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
AJG96825.1Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M20A family. (386 aa)
fhsFormate--tetrahydrofolate ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the formate--tetrahydrofolate ligase family. (556 aa)
serC3-phosphoserine/phosphohydroxythreonine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. (360 aa)
aksAHomoaconitate hydratase; In Methanococcus jannaschii this protein catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate; functions in alphaketosuberate synthesis which is a precursor in coenzyme B and biotin synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the alpha-IPM synthase/homocitrate synthase family. (389 aa)
AMK50417.1Group II intron reverse transcriptase/maturase; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)
AMK50416.1Group II intron reverse transcriptase/maturase; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)
LF65_06050Cro/Cl family transcriptional regulator; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (602 aa)
AMK50367.1Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (199 aa)
fieF_1Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (289 aa)
AMK50347.1Group II intron reverse transcriptase/maturase; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)
AMK50343.1Group II intron reverse transcriptase/maturase; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)
AJH02248.1MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
yycJMetallohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
pdxSPyridoxal biosynthesis protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. (289 aa)
AJH02210.1Carbonate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (796 aa)
puuR_3DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)
kdgK_3Fructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
tadAAdenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (149 aa)
AJH02080.1Fumarylacetoacetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
tcdA_1tRNA threonylcarbamoyladenosine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
AJH02034.1Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
AJH02003.1ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (761 aa)
tktA_3Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
AJH01951.1Fructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)
AJH01920.1Fructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
AJH01879.1Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa)
AJH01868.1Fructoselysine 6-kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
AJH01860.1Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
AJH01849.1Cation diffusion facilitator family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (391 aa)
AJH01818.1Group II intron reverse transcriptase/maturase; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)
AJH01800.1Glycosyl transferase family 28; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa)
AJH01713.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (428 aa)
AJH01671.1AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (362 aa)
iolC5-dehydro-2-deoxygluconokinase; Catalyzes the phosphorylation of 5-dehydro-2-deoxy-D- gluconate (2-deoxy-5-keto-D-gluconate or DKG) to 6-phospho-5-dehydro-2- deoxy-D-gluconate (DKGP). (339 aa)
AJH01598.1acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
AJH01596.1Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (186 aa)
argBAcetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. (284 aa)
argCN-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. (344 aa)
AJH01538.1Calcium-transporting ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (916 aa)
AJH01391.1Phosphoenolpyruvate phosphomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (432 aa)
phnWSeptum site-determining protein; Involved in phosphonate degradation; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily. (374 aa)
AJH01378.1Rhomboid family intramembrane serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)
AJH01326.1NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
AJH01293.1ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (861 aa)
AJH01244.2Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (1525 aa)
AJH01220.1DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)
AJH01148.1Amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (577 aa)
AJH01133.1GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (147 aa)
AJH01026.1Beta-ketoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. (411 aa)
AJH00978.1GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (147 aa)
AJH00926.1Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology. (349 aa)
AJH00914.1Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
AJH00905.1Fructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)
AJH00844.23-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
AJH00788.1Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology. (112 aa)
AJH00776.1Cytoplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (173 aa)
AJH00677.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1720 aa)
AJH00666.1Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
AJH00655.1Isoprenylcysteine carboxyl methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)
AJH00638.1Cation diffusion facilitator family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (393 aa)
LF65_04084Hypothetical protein; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (433 aa)
Your Current Organism:
Clostridium beijerinckii
NCBI taxonomy Id: 1520
Other names: ATCC 25752, BCRC 14488, C. beijerinckii, CCUG 56442, CIP 104308, Clostridium rubrum, Clostridium sp. H18, DSM 791, LMG 5716, LMG:5716, NCIMB 9362, NCTC 13035
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