(43 nodes) FAD/NAD(P)-binding domain superfamily network (Clostridium beijerinckii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJG98811.1	NADPH-dependent FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (807 aa)
	AJG96705.1	FAD/NAD(P)-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)
	trxB_1	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	AJG96917.2	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (533 aa)
	AJG97076.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	AJG97365.1	Dihydropyrimidine dehydrogenase; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology. (464 aa)
	AJG97481.1	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
	AJG97498.1	L-aspartate oxidase; Catalyzes the formation of oxaloacetate from L-aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology. (435 aa)
	gltD_3	Dihydropyrimidine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)
	mnmG_1	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (425 aa)
	AJG98668.1	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (464 aa)
	AJG98686.1	2-enoate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (664 aa)
	AJG98692.1	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (425 aa)
	AJG98731.1	Selenate reductase subunit YgfK; Derived by automated computational analysis using gene prediction method: Protein Homology. (1005 aa)
	AJH01054.1	NADH oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)
	AJH01148.1	Amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (577 aa)
	AJH01229.1	Adenylylsulfate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (568 aa)
	AJH01243.1	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (490 aa)
	AJH01543.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (844 aa)
	hcnB_3	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
	AJH01564.1	FAD/NAD(P)-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (475 aa)
	AJH01585.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (745 aa)
	AJH01625.1	NADH oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (640 aa)
	AJH01629.1	2,4-dienoyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (669 aa)
	AJH01647.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
	AJH01648.1	FAD/NAD(P)-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (475 aa)
	AJH02253.1	Flavoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology. (414 aa)
	mnmG	tRNA uridine 5-carboxymethylaminomethyl modification protein; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. (626 aa)
	AMK50362.1	Dihydropyrimidine dehydrogenase; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology. (464 aa)
	AJG99051.2	Dihydropyrimidine dehydrogenase; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology. (462 aa)
	AJG99098.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sulfur carrier protein TusA family. (828 aa)
	AJG99322.1	NADH:flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (647 aa)
	AJG99373.1	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)
	AJG99422.1	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GMC oxidoreductase family. (523 aa)
	AJG99481.1	Amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (578 aa)
	AJG99511.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (432 aa)
	AJG99550.1	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (405 aa)
	AJG99945.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (566 aa)
	AJH00008.1	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (481 aa)
	AJH00063.1	Alkyl hydroperoxide reductase subunit F; Derived by automated computational analysis using gene prediction method: Protein Homology. (509 aa)
	AJH00149.2	Dihydropyrimidine dehydrogenase; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)
	AJH00368.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
	AJH00637.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (403 aa)

Your Current Organism:

Clostridium beijerinckii

NCBI taxonomy Id: 1520
Other names: ATCC 25752, BCRC 14488, C. beijerinckii, CCUG 56442, CIP 104308, Clostridium rubrum, Clostridium sp. H18, DSM 791, LMG 5716, LMG:5716, NCIMB 9362, NCTC 13035

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJG96705.1	AJG97076.1	LF65_00005	LF65_00432	FAD/NAD(P)-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.820
AJG96705.1	AJH01647.1	LF65_00005	LF65_05122	FAD/NAD(P)-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822
AJG96705.1	hcnB_3	LF65_00005	LF65_05035	FAD/NAD(P)-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822
AJG97076.1	AJG96705.1	LF65_00432	LF65_00005	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD/NAD(P)-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.820
AJG97076.1	AJG99098.1	LF65_00432	LF65_02516	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sulfur carrier protein TusA family.	0.457
AJG97076.1	AJH00368.1	LF65_00432	LF65_03815	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.579
AJG97076.1	AJH01564.1	LF65_00432	LF65_05036	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD/NAD(P)-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJG97076.1	AJH01648.1	LF65_00432	LF65_05123	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD/NAD(P)-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJG97076.1	trxB_1	LF65_00432	LF65_00158	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.579
AJG97365.1	AJG98731.1	LF65_00737	LF65_02143	Dihydropyrimidine dehydrogenase; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.	Selenate reductase subunit YgfK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.540
AJG97365.1	AJG99051.2	LF65_00737	LF65_02468	Dihydropyrimidine dehydrogenase; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydropyrimidine dehydrogenase; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJG97365.1	AJG99098.1	LF65_00737	LF65_02516	Dihydropyrimidine dehydrogenase; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sulfur carrier protein TusA family.	0.475
AJG97365.1	AJH00149.2	LF65_00737	LF65_03592	Dihydropyrimidine dehydrogenase; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydropyrimidine dehydrogenase; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJG97365.1	AJH01243.1	LF65_00737	LF65_04712	Dihydropyrimidine dehydrogenase; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
AJG97365.1	AMK50362.1	LF65_00737	LF65_05995	Dihydropyrimidine dehydrogenase; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydropyrimidine dehydrogenase; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJG97365.1	gltD_3	LF65_00737	LF65_01990	Dihydropyrimidine dehydrogenase; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydropyrimidine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
AJG97481.1	AJG98731.1	LF65_00856	LF65_02143	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Selenate reductase subunit YgfK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
AJG97481.1	AJG99098.1	LF65_00856	LF65_02516	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sulfur carrier protein TusA family.	0.457
AJG97481.1	AJH00063.1	LF65_00856	LF65_03506	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkyl hydroperoxide reductase subunit F; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
AJG97481.1	AJH00368.1	LF65_00856	LF65_03815	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650

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