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alaS alaS sbcD sbcD AJG97448.1 AJG97448.1 AJG97413.1 AJG97413.1 AJG97181.1 AJG97181.1 pgi pgi purR_1 purR_1 AJG99208.1 AJG99208.1 deoC deoC AJG99913.1 AJG99913.1 xpt xpt AJG99360.1 AJG99360.1 AJG99223.1 AJG99223.1 AJG99200.1 AJG99200.1 AJG98974.1 AJG98974.1 AJG98599.1 AJG98599.1 apt apt AJG98248.1 AJG98248.1 AJG98227.1 AJG98227.1 AJG98217.1 AJG98217.1 serS serS AJG98086.1 AJG98086.1 hemB hemB AJG97975.1 AJG97975.1 cdd_3 cdd_3 cdd cdd AJH00542.1 AJH00542.1 AJH00880.1 AJH00880.1 AJH00883.2 AJH00883.2 AJH01023.1 AJH01023.1 AJH01167.1 AJH01167.1 deoC-2 deoC-2 AJH01322.1 AJH01322.1 AJH01341.1 AJH01341.1 AJH01349.1 AJH01349.1 AJH01866.1 AJH01866.1 AJH02213.1 AJH02213.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
alaSalanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (879 aa)
sbcDExonuclease sbcCD subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (409 aa)
AJG97448.12-deoxyribose-5-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (234 aa)
AJG97413.1Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family. (763 aa)
AJG97181.1Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)
pgiGlucose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GPI family. (449 aa)
purR_1LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
AJG99208.1Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
deoC2-deoxyribose-5-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (216 aa)
AJG99913.1Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
xptXanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis. (190 aa)
AJG99360.1Cytidine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (130 aa)
AJG99223.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (589 aa)
AJG99200.1Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
AJG98974.1Nicotinate phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAPRTase family. (489 aa)
AJG98599.1Phosphomethylpyrimidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
aptAdenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. (172 aa)
AJG98248.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1030 aa)
AJG98227.1Beta-glucuronidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family. (603 aa)
AJG98217.1Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family. (813 aa)
serSserine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (425 aa)
AJG98086.1Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family. (494 aa)
hemBDelta-aminolevulinic acid dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ALAD family. (321 aa)
AJG97975.1Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1008 aa)
cdd_3Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (133 aa)
cddABC transporter; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (140 aa)
AJH00542.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
AJH00880.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (732 aa)
AJH00883.2Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (725 aa)
AJH01023.1Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
AJH01167.1Heat-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the small heat shock protein (HSP20) family. (149 aa)
deoC-22-deoxyribose-5-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (216 aa)
AJH01322.1Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (276 aa)
AJH01341.1Hypothetical protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (548 aa)
AJH01349.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
AJH01866.1alanyl-tRNA editing protein AlaX-L; Derived by automated computational analysis using gene prediction method: Protein Homology. (403 aa)
AJH02213.1Molecular chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the small heat shock protein (HSP20) family. (170 aa)
Your Current Organism:
Clostridium beijerinckii
NCBI taxonomy Id: 1520
Other names: ATCC 25752, BCRC 14488, C. beijerinckii, CCUG 56442, CIP 104308, Clostridium rubrum, Clostridium sp. H18, DSM 791, LMG 5716, LMG:5716, NCIMB 9362, NCTC 13035
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