(22 nodes) (2021) Genome-Wide Transcriptomic Analysis of n-Caproic Acid Production in Ruminococcaceae Bacterium CPB6 with Lactate Supplementation. network (Clostridium beijerinckii)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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protein homology

Your Input:
	acdA_1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
	mmgB	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
	AJG97113.1	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa)
	spoIIID	Stage III sporulation protein D; Derived by automated computational analysis using gene prediction method: Protein Homology. (84 aa)
	ldh-3	L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. (316 aa)
	spoIVA	Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. (492 aa)
	eutD	Phosphate acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	ackA	Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (400 aa)
	spoIIIAD	Stage III sporulation protein AD; Derived by automated computational analysis using gene prediction method: Protein Homology. (127 aa)
	AJG98602.1	PTS fructose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology. (640 aa)
	AJG99350.1	PTS fructose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology. (359 aa)
	atoB	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family. (392 aa)
	AJH00844.2	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	ldh	L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. (316 aa)
	AJH01589.1	PTS glucose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)
	AJH01598.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
	AJH01769.1	PTS glucose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology. (158 aa)
	AJH01950.1	PTS glucose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)
	ldh-2	L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. (315 aa)
	glgC	Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. (386 aa)
	AMK50536.1	Glycogen-branching enzyme; Catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; Derived by automated computational analysis using gene prediction method: Protein Homology. (545 aa)
	AJG97025.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)

Your Current Organism:

Clostridium beijerinckii

NCBI taxonomy Id: 1520
Other names: ATCC 25752, BCRC 14488, C. beijerinckii, CCUG 56442, CIP 104308, Clostridium rubrum, Clostridium sp. H18, DSM 791, LMG 5716, LMG:5716, NCIMB 9362, NCTC 13035

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJG97025.1	AJG97113.1	LF65_00356	LF65_00469	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	0.985
AJG97025.1	AJH00844.2	LF65_00356	LF65_04304	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
AJG97025.1	AJH01598.1	LF65_00356	LF65_05070	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
AJG97025.1	acdA_1	LF65_00356	LF65_02207	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJG97025.1	ackA	LF65_00356	LF65_01290	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.	0.656
AJG97025.1	atoB	LF65_00356	LF65_04088	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	0.986
AJG97025.1	eutD	LF65_00356	LF65_01289	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
AJG97025.1	mmgB	LF65_00356	LF65_00359	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
AJG97113.1	AJG97025.1	LF65_00469	LF65_00356	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
AJG97113.1	AJH00844.2	LF65_00469	LF65_04304	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AJG97113.1	AJH01598.1	LF65_00469	LF65_05070	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
AJG97113.1	acdA_1	LF65_00469	LF65_02207	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
AJG97113.1	ackA	LF65_00469	LF65_01290	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.	0.685
AJG97113.1	atoB	LF65_00469	LF65_04088	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	0.901
AJG97113.1	eutD	LF65_00469	LF65_01289	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	Phosphate acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968
AJG97113.1	mmgB	LF65_00469	LF65_00359	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.	3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AJG98602.1	AJG99350.1	LF65_02004	LF65_02777	PTS fructose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS fructose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
AJG98602.1	AJH01589.1	LF65_02004	LF65_05061	PTS fructose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS glucose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.596
AJG98602.1	AJH01769.1	LF65_02004	LF65_05244	PTS fructose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS glucose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.596
AJG98602.1	AJH01950.1	LF65_02004	LF65_05433	PTS fructose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS glucose transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.596

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