(96 nodes) Histidine kinase-like ATPases network (Clostridium beijerinckii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	baeS_1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (473 aa)
	AJH00965.1	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (920 aa)
	AJH00954.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (420 aa)
	AJH00921.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (602 aa)
	AJH00877.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
	AJH00842.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (607 aa)
	AJH00808.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)
	AJH00800.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (457 aa)
	phoR_15	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)
	AJH00561.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (420 aa)
	AJH00416.1	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1036 aa)
	AJH00396.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (486 aa)
	AJH00361.1	Lantibiotic biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (458 aa)
	AJH00126.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (610 aa)
	AJH00026.2	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (668 aa)
	AJH00024.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (327 aa)
	AJH00020.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (669 aa)
	AJG99998.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)
	AJG99929.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (457 aa)
	AJG99838.2	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
	AJG99720.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (498 aa)
	phoR_9	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (506 aa)
	AJG99663.1	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (625 aa)
	AJG99623.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
	AJG99610.2	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)
	AJG99591.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa)
	AJG99579.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (951 aa)
	mutL	DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (664 aa)
	AJG99453.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1210 aa)
	AJG99328.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (423 aa)
	AJG99325.2	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (433 aa)
	tmoS_4	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (479 aa)
	AJG99263.1	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (523 aa)
	AJG99230.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (624 aa)
	LF65_02630	Serine protease; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)
	AJG99132.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (627 aa)
	baeS_2	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (484 aa)
	rpfC_2	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1032 aa)
	AJG99026.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (1076 aa)
	AJG99016.2	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (714 aa)
	AJG98983.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (644 aa)
	kinE_1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (444 aa)
	AJG98805.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	AJG98545.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (481 aa)
	AJG98472.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (504 aa)
	AJG98370.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (613 aa)
	AJG98258.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa)
	AJG98185.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	AJG98154.2	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (860 aa)
	AJG98090.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (579 aa)
	AJG97973.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (596 aa)
	AJG97863.1	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (568 aa)
	AJG97563.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (601 aa)
	spoIIAB	Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. (143 aa)
	phoR_4	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (671 aa)
	divJ	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (636 aa)
	AJG97471.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (625 aa)
	AJG97414.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (602 aa)
	AJG97398.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (781 aa)
	AJG97388.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (449 aa)
	LF65_00751	Transposase; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)
	AJG97363.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (420 aa)
	AJG97292.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (502 aa)
	ypdA_1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
	AJG97232.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa)
	AJG97140.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (499 aa)
	AJG97063.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (682 aa)
	AJG96999.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)
	walK_3	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (451 aa)
	AJH01003.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (416 aa)
	AJG96738.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (449 aa)
	AJG96712.2	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)
	AJH01021.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (783 aa)
	AJH01045.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (524 aa)
	AJH01056.2	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (502 aa)
	AJH01059.1	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology. (687 aa)
	AJH01094.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)
	AJH01145.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)
	htpG	Molecular chaperone HtpG; Derived by automated computational analysis using gene prediction method: Protein Homology. (644 aa)
	AJH01210.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
	AJH01217.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (420 aa)
	AJH01360.1	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology. (687 aa)
	AJH01495.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (602 aa)
	AJH01522.2	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (595 aa)
	AJH01546.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (568 aa)
	AJH01547.1	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (649 aa)
	AJH01556.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (518 aa)
	AJH01662.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (416 aa)
	saeS	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (464 aa)
	AJH01740.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (589 aa)
	AJH01884.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (979 aa)
	AJH01890.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (490 aa)
	AJH01899.1	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology. (689 aa)
	yehU_8	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (586 aa)
	AMK50396.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)
	AMK50537.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)

Your Current Organism:

Clostridium beijerinckii

NCBI taxonomy Id: 1520
Other names: ATCC 25752, BCRC 14488, C. beijerinckii, CCUG 56442, CIP 104308, Clostridium rubrum, Clostridium sp. H18, DSM 791, LMG 5716, LMG:5716, NCIMB 9362, NCTC 13035

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJG96712.2	AJG96738.1	LF65_00016	LF65_00043	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
AJG96712.2	AJG97063.1	LF65_00016	LF65_00414	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.440
AJG96712.2	AJG97292.1	LF65_00016	LF65_00661	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.452
AJG96712.2	AJG97388.1	LF65_00016	LF65_00761	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.422
AJG96712.2	AJG97398.1	LF65_00016	LF65_00771	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.824
AJG96712.2	AJG97863.1	LF65_00016	LF65_01250	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436
AJG96712.2	AJG98370.1	LF65_00016	LF65_01767	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
AJG96712.2	AJG98472.1	LF65_00016	LF65_01871	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.422
AJG96712.2	AJG98545.1	LF65_00016	LF65_01947	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.432
AJG96712.2	AJG98983.1	LF65_00016	LF65_02397	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
AJG96712.2	AJG99026.1	LF65_00016	LF65_02443	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945
AJG96712.2	AJG99263.1	LF65_00016	LF65_02690	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.467
AJG96712.2	AJG99325.2	LF65_00016	LF65_02752	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
AJG96712.2	AJG99328.1	LF65_00016	LF65_02755	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
AJG96712.2	AJG99453.1	LF65_00016	LF65_02883	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.947
AJG96712.2	AJG99579.1	LF65_00016	LF65_03010	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
AJG96712.2	AJG99663.1	LF65_00016	LF65_03096	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
AJG96712.2	AJG99838.2	LF65_00016	LF65_03275	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.756
AJG96712.2	AJG99998.1	LF65_00016	LF65_03439	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436
AJG96712.2	AJH00020.1	LF65_00016	LF65_03463	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822

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