Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| GCA_900177895_00634 | hrpB | GCA_900177895_00634 | GCA_900177895_00636 | Unannotated protein. | Unannotated protein. | 0.990 |
| GCA_900177895_00634 | rnc | GCA_900177895_00634 | GCA_900177895_01512 | Unannotated protein. | Unannotated protein; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.437 |
| GCA_900177895_00634 | rph | GCA_900177895_00634 | GCA_900177895_01514 | Unannotated protein. | Unannotated protein; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.741 |
| GCA_900177895_00634 | rsmA | GCA_900177895_00634 | GCA_900177895_00485 | Unannotated protein. | Unannotated protein; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.624 |
| GCA_900177895_01513 | rnc | GCA_900177895_01513 | GCA_900177895_01512 | Unannotated protein. | Unannotated protein; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.536 |
| GCA_900177895_01513 | rph | GCA_900177895_01513 | GCA_900177895_01514 | Unannotated protein. | Unannotated protein; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.618 |
| hrpB | GCA_900177895_00634 | GCA_900177895_00636 | GCA_900177895_00634 | Unannotated protein. | Unannotated protein. | 0.990 |
| hrpB | rnc | GCA_900177895_00636 | GCA_900177895_01512 | Unannotated protein. | Unannotated protein; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.437 |
| hrpB | rph | GCA_900177895_00636 | GCA_900177895_01514 | Unannotated protein. | Unannotated protein; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.741 |
| hrpB | rsmA | GCA_900177895_00636 | GCA_900177895_00485 | Unannotated protein. | Unannotated protein; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.624 |
| rbfA | rimM | GCA_900177895_01887 | GCA_900177895_00173 | Unannotated protein; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | Unannotated protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.461 |
| rimM | rbfA | GCA_900177895_00173 | GCA_900177895_01887 | Unannotated protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | Unannotated protein; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.461 |
| rimM | rsmG | GCA_900177895_00173 | GCA_900177895_01666 | Unannotated protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | Unannotated protein; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. | 0.482 |
| rlmB | rluC_2 | GCA_900177895_01205 | GCA_900177895_00522 | Unannotated protein; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.742 |
| rlmB | rluD | GCA_900177895_01205 | GCA_900177895_01210 | Unannotated protein; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.796 |
| rlmB | rnc | GCA_900177895_01205 | GCA_900177895_01512 | Unannotated protein; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | Unannotated protein; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.428 |
| rlmB | rsmH | GCA_900177895_01205 | GCA_900177895_00737 | Unannotated protein; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | Unannotated protein; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.505 |
| rlmB | truC | GCA_900177895_01205 | GCA_900177895_00903 | Unannotated protein; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | Unannotated protein. | 0.665 |
| rlmE | rnc | GCA_900177895_01050 | GCA_900177895_01512 | Unannotated protein; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | Unannotated protein; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.431 |
| rlmE | rsmA | GCA_900177895_01050 | GCA_900177895_00485 | Unannotated protein; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | Unannotated protein; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.565 |
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