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| | AIL65060.1 | Transcriptional regulatory protein. (225 aa) |
| | osmY | Osmotically-inducible protein Y precursor. (198 aa) |
| | pleD_1 | Response regulator PleD. (319 aa) |
| | ctrA | Cell cycle response regulator CtrA. (240 aa) |
| | pleD_2 | Response regulator PleD. (457 aa) |
| | uvrB | UvrB; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA prein [...] (663 aa) |
| | recF | DNA replication and repair protein recF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. (373 aa) |
| | nth | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (211 aa) |
| | recJ | Single-stranded-DNA-specific exonuclease recJ. (590 aa) |
| | ruvB | Holliday junction ATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (340 aa) |
| | ruvA | Holliday junction ATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (201 aa) |
| | ruvC | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (159 aa) |
| | yfiH | Laccase domain protein yfiH; Belongs to the multicopper oxidase YfiH/RL5 family. (254 aa) |
| | YycG_3 | Sensor histidine kinase. (484 aa) |
| | DivK_1 | Chemotaxis protein CheY. (145 aa) |
| | aer | Methyl-accepting chemotaxis protein. (554 aa) |
| | grxC | Glutaredoxin-3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins. (85 aa) |
| | cheY_1 | Chemotaxis protein CheY. (162 aa) |
| | AIL65348.1 | Hypothetical protein. (285 aa) |
| | bdbD_1 | Thiol-disulfide oxidoreductase D. (264 aa) |
| | AIL65356.1 | Uncharacterized protein conserved in bacteria. (265 aa) |
| | barA | Signal transduction histidine-protein kinase BarA. (1009 aa) |
| | cph1 | Histidine kinase-like ATPase. (236 aa) |
| | rssB | Swarming motility regulation protein rssB. (138 aa) |
| | mrcA | Penicillin-binding protein 1A. (788 aa) |
| | tag | DNA-3-methyladenine glycosylase 1. (191 aa) |
| | estB | Carboxylesterase 2. (215 aa) |
| | bdlA | Methyl-accepting chemotaxis protein CtpH. (558 aa) |
| | fliN | Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family. (92 aa) |
| | fliG | Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. (339 aa) |
| | AIL65436.1 | Sensory histidine kinase CreC. (566 aa) |
| | AIL65463.1 | DnaJ domain protein. (61 aa) |
| | lptD | LPS-assembly protein LptD precursor; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. (721 aa) |
| | AIL65482.1 | ComEC family competence protein. (669 aa) |
| | DivK_2 | Sensor histidine kinase. (603 aa) |
| | clpB | Chaperone protein ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. (853 aa) |
| | bcp | Putative peroxiredoxin bcp. (156 aa) |
| | AIL65549.1 | Peroxiredoxin (PRX)-like protein. (183 aa) |
| | phoR | Phosphate regulon sensor protein phoR. (452 aa) |
| | motB | Chemotaxis protein MotB. (289 aa) |
| | YycG_5 | Sensor histidine kinase. (496 aa) |
| | AIL65619.1 | Hypothetical protein. (134 aa) |
| | cheB | Chemotaxis response regulator protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (409 aa) |
| | cheY_2 | Chemotaxis protein CheY. (121 aa) |
| | AIL65654.1 | Chemotaxis protein CheW. (163 aa) |
| | cheA | Chemotaxis protein CheA. (868 aa) |
| | AIL65656.1 | Uncharacterized protein conserved in bacteria. (210 aa) |
| | AIL65664.1 | RNA polymerase-binding transcription factor CarD. (168 aa) |
| | recO | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (243 aa) |
| | AIL65676.1 | Phosphoribosyl transferase domain protein. (210 aa) |
| | YycG_6 | Sensor histidine kinase. (603 aa) |
| | ompR | Transcriptional regulatory protein OmpR. (229 aa) |
| | recR | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (197 aa) |
| | AIL65699.1 | YbaB/EbfC family DNA-binding protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (100 aa) |
| | zraR | Transcriptional regulatory protein ZraR. (441 aa) |
| | phoB | Phosphate regulon transcriptional regulatory protein phoB. (245 aa) |
| | recN | Recombination protein N; May be involved in recombinational repair of damaged DNA. (552 aa) |
| | AIL65758.1 | Nitronate monooxygenase. (330 aa) |
| | mfd | Transcription-repair-coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1163 aa) |
| | lon | Lon protease; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (796 aa) |
| | recA | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (341 aa) |
| | uvrA | UvrABC system protein A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (959 aa) |
| | ssb | Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. (154 aa) |
| | AIL65821.1 | Hypothetical protein; Belongs to the UPF0246 family. (253 aa) |
| | YycG_7 | Sensor histidine kinase. (796 aa) |
| | mscM | Miniconductance mechanosensitive channel. (392 aa) |
| | rpfC | Sensory/regulatory protein RpfC. (752 aa) |
| | mutM | Formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (273 aa) |
| | AfsQ1_2 | Hypothetical protein; Contains HATPase_c and CheY domains. (244 aa) |
| | LuxQ | Sensor histidine kinase. (796 aa) |
| | PleC | Sensor histidine kinase. (787 aa) |
| | YycG_8 | Sensor histidine kinase. (613 aa) |
| | WalK | Sensor histidine kinase. (729 aa) |
| | ArcB | Sensor histidine kinase. (782 aa) |
| | dnaJ | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] (378 aa) |
| | mcpB | Methyl-accepting chemotaxis protein. (689 aa) |
| | AIL65939.2 | Hypothetical protein. (873 aa) |
| | AIL66027.1 | Protein of unknown function (DUF541). (258 aa) |
| | AIL66030.1 | DoxX membrane protein. (273 aa) |
| | radA | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (465 aa) |
| | evgS | Sensor protein evgS precursor. (769 aa) |
| | ligA | DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. (713 aa) |
| | yoaE | Integral membrane protein TerC. (243 aa) |
| | tlpA | Cytochrome biogenesis protein tlpA. (239 aa) |
| | AIL66116.1 | Protein of unknown function (DUF541). (270 aa) |
| | AIL66126.1 | Phage-related protein. (111 aa) |
| | htrA | Putative serine protease HtrA. (332 aa) |
| | mutS | DNA mismatch repair protein mutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (868 aa) |
| | tsaA | Putative peroxiredoxin. (200 aa) |
| | trxB | Thioredoxin reductase. (315 aa) |
| | AIL64474.1 | Hypothetical protein. (84 aa) |
| | AIL64475.1 | Hypothetical protein. (76 aa) |
| | xthA_1 | Exodeoxyribonuclease III. (263 aa) |
| | uvrC | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (619 aa) |
| | glnG | Nitrogen regulation protein NR(I). (484 aa) |
| | AIL64581.1 | Hypothetical protein. (236 aa) |
| | YycG_1 | Sensor histidine kinase. (785 aa) |
| | afsQ1_1 | Transcriptional regulatory protein AfsQ1. (360 aa) |
| | cqsS | CAI-1 autoinducer sensor kinase/phosphatase CqsS. (299 aa) |
| | apaG | CO2+/MG2+ efflux protein ApaG. (131 aa) |
| | polA | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (887 aa) |
| | bla | Beta-lactamase OXA-1 precursor. (271 aa) |
| | fliM | Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. (345 aa) |
| | fliL | Flagellar FliL protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. (182 aa) |
| | YycG_2 | Sensor histidine kinase. (309 aa) |
| | AIL64705.1 | Two component system sensor kinase SsrA. (422 aa) |
| | xthA_2 | Exodeoxyribonuclease III. (261 aa) |
| | uspF | Universal stress protein F. (142 aa) |
| | AIL64727.1 | Ferredoxin--NADP reductase. (335 aa) |
| | AIL64733.1 | Hypothetical protein. (363 aa) |
| | AIL64741.1 | Conjugal transfer protein TrbD; Type IV secretion system protein virB3. (107 aa) |
| | AIL64874.1 | Uracil DNA glycosylase superfamily protein. (196 aa) |
| | ychF | Ribosome-binding ATPase YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (363 aa) |
| | mutL | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (619 aa) |
| | kdpE | KDP operon transcriptional regulatory protein KdpE. (235 aa) |
| | ada | Regulatory protein of adaptative response. (172 aa) |
| | envZ | Osmolarity sensor protein EnvZ. (441 aa) |
| | sugE | Quaternary ammonium compound-resistance protein sugE. (106 aa) |
| | cutA | Divalent-cation tolerance protein CutA. (103 aa) |
| | sodB | Superoxide dismutase [Fe]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (216 aa) |
| | AIL65059.1 | Uncharacterized protein conserved in bacteria. (144 aa) |
