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| | AIL64578.1 | Hypothetical protein. (102 aa) |
| | xseA | Exodeoxyribonuclease 7 large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (461 aa) |
| | AIL64547.1 | Transposase. (130 aa) |
| | AIL64546.1 | Hypothetical protein. (102 aa) |
| | aspS | Aspartate--tRNA ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. (602 aa) |
| | AIL64535.1 | Hypothetical protein. (102 aa) |
| | AIL64534.1 | Transposase. (130 aa) |
| | rpoZ | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (130 aa) |
| | AIL64528.1 | Hypothetical protein. (102 aa) |
| | AIL64527.1 | Transposase. (130 aa) |
| | AIL64523.1 | Transposase IS116/IS110/IS902 family protein. (313 aa) |
| | AIL64521.1 | Transposase. (130 aa) |
| | AIL64520.1 | Hypothetical protein. (102 aa) |
| | xthA_1 | Exodeoxyribonuclease III. (263 aa) |
| | AIL64510.1 | Integrase core domain protein. (319 aa) |
| | AIL64485.1 | Transposase. (130 aa) |
| | AIL64484.1 | Hypothetical protein. (102 aa) |
| | AIL64461.1 | Hypothetical protein. (102 aa) |
| | AIL64460.1 | Transposase. (130 aa) |
| | mutS | DNA mismatch repair protein mutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (868 aa) |
| | AIL64447.1 | Transposase. (130 aa) |
| | AIL64446.1 | Hypothetical protein. (102 aa) |
| | AIL64443.1 | Hypothetical protein. (443 aa) |
| | AIL64440.1 | Transposase. (130 aa) |
| | AIL64433.1 | Transposase. (130 aa) |
| | AIL64432.1 | Hypothetical protein. (102 aa) |
| | rsmH | Ribosomal RNA small subunit methyltransferase H; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (311 aa) |
| | AIL64419.1 | Transposase. (130 aa) |
| | AIL64418.1 | Hypothetical protein. (102 aa) |
| | AIL65572.1 | Putative TrmH family tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (247 aa) |
| | AIL65567.1 | Integrase core domain protein. (323 aa) |
| | rsmE | Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. (241 aa) |
| | AIL65563.1 | Transposase. (130 aa) |
| | AIL65562.1 | Hypothetical protein. (165 aa) |
| | AIL65558.1 | Hypothetical protein. (102 aa) |
| | AIL65557.1 | Transposase. (130 aa) |
| | AIL65555.1 | Transposase. (130 aa) |
| | AIL65554.1 | Hypothetical protein. (102 aa) |
| | pcrA | ATP-dependent DNA helicase pcrA. (655 aa) |
| | AIL65531.1 | Integrase core domain protein. (319 aa) |
| | tadA | tRNA-specific adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (144 aa) |
| | AIL65516.1 | Hypothetical protein. (223 aa) |
| | alaS | Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (880 aa) |
| | AIL65489.1 | Transposase. (162 aa) |
| | dus | tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (325 aa) |
| | AIL65473.1 | DNA polymerase III subunit delta. (338 aa) |
| | AIL65466.1 | Hypothetical protein. (102 aa) |
| | AIL65465.1 | Transposase. (130 aa) |
| | AIL65463.1 | DnaJ domain protein. (61 aa) |
| | mnmE | tRNA modification GTPase MnmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. (444 aa) |
| | rmuC | DNA recombination protein rmuC. (425 aa) |
| | AIL65421.1 | Transposase. (130 aa) |
| | AIL65420.1 | Hypothetical protein. (102 aa) |
| | tag | DNA-3-methyladenine glycosylase 1. (191 aa) |
| | tilS | tRNA(Ile)-lysidine synthase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. (449 aa) |
| | truA | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (248 aa) |
| | AIL65372.1 | Integrase core domain protein. (280 aa) |
| | AIL65356.1 | Uncharacterized protein conserved in bacteria. (265 aa) |
| | AIL65345.1 | Hypothetical protein. (102 aa) |
| | AIL65344.1 | Transposase. (130 aa) |
| | xseB | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (79 aa) |
| | tyrS | Tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. (418 aa) |
| | AIL65335.1 | Hypothetical protein. (102 aa) |
| | AIL65334.1 | Transposase. (130 aa) |
| | rlmE | Ribosomal RNA large subunit methyltransferase E; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. (231 aa) |
| | AIL65317.1 | Transposase. (130 aa) |
| | AIL65316.1 | Hypothetical protein. (102 aa) |
| | tgt | Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form t [...] (373 aa) |
| | AIL65311.1 | Hypothetical protein. (102 aa) |
| | AIL65310.1 | Transposase. (130 aa) |
| | trpS | Tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family. (328 aa) |
| | rnhA | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase H family. (149 aa) |
| | rho | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (436 aa) |
| | dnaQ | DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. (226 aa) |
| | AIL65279.1 | Hypothetical protein; COG0802 Predicted ATPase or kinase. (152 aa) |
| | fmt | Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. (303 aa) |
| | mnmG | Glucose-inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. (618 aa) |
| | rsmG | Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. (206 aa) |
| | ruvC | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (159 aa) |
| | ruvA | Holliday junction ATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (201 aa) |
| | ruvB | Holliday junction ATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (340 aa) |
| | rsmI | Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (286 aa) |
| | AIL65221.1 | Integrase core domain protein. (290 aa) |
| | AIL65219.1 | Hypothetical protein; Belongs to the UPF0102 family. (105 aa) |
| | recJ | Single-stranded-DNA-specific exonuclease recJ. (590 aa) |
| | nth | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (211 aa) |
| | rluC | Ribosomal large subunit pseudouridine synthase C; Belongs to the pseudouridine synthase RluA family. (289 aa) |
| | gyrB | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (803 aa) |
| | recF | DNA replication and repair protein recF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. (373 aa) |
| | uvrB | UvrB; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA prein [...] (663 aa) |
| | leuS | Leucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. (834 aa) |
| | AIL65182.1 | Hypothetical protein. (102 aa) |
| | AIL65181.1 | Transposase. (130 aa) |
| | mnmA | tRNA-specific 2-thiouridylase mnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. (365 aa) |
| | AIL65158.1 | Ribonuclease D. (177 aa) |
| | purH | Bifunctional purine biosynthesis protein PurH. (519 aa) |
| | rimM | Ribosome maturation factor rimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. (168 aa) |
| | AIL65145.1 | Hypothetical protein. (55 aa) |
| | gcp | tRNA N6-adenosine threonylcarbamoyltransferase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. (337 aa) |
| | miaA | tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (306 aa) |
| | xerD_2 | Tyrosine recombinase XerD; Belongs to the 'phage' integrase family. (333 aa) |
| | dnaX_1 | DNA polymerase III subunit tau. (330 aa) |
| | ileS | Isoleucine--tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily. (1060 aa) |
| | AIL65080.1 | Hypothetical protein. (102 aa) |
| | AIL65079.1 | Transposase. (130 aa) |
| | rnpA | Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (110 aa) |
| | ybeY | Putative rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (177 aa) |
| | AIL65032.1 | Hypothetical protein. (102 aa) |
| | AIL65031.2 | Transposase. (130 aa) |
| | rsmA | Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. (276 aa) |
| | gltX | Glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (468 aa) |
| | lysS | Lysine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. (519 aa) |
| | valS | Valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner. (820 aa) |
| | AIL64965.1 | Transposase. (130 aa) |
| | AIL64964.1 | Hypothetical protein. (102 aa) |
| | AIL64958.1 | Transposase. (130 aa) |
| | AIL64957.1 | Hypothetical protein. (102 aa) |
| | nusB | N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. (166 aa) |
| | AIL64950.1 | Integrase core domain protein. (319 aa) |
| | miaB_2 | (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. (446 aa) |
| | nusG | Transcription antitermination protein NusG; Participates in transcription elongation, termination and antitermination. (181 aa) |
| | rpoB | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1352 aa) |
| | rpoC | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1386 aa) |
| | AIL64918.2 | Transposase. (130 aa) |
| | AIL64917.1 | Hypothetical protein. (102 aa) |
| | AIL64916.1 | Transposase. (131 aa) |
| | gyrA | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (898 aa) |
| | ada | Regulatory protein of adaptative response. (172 aa) |
| | AIL64907.1 | Transposase. (130 aa) |
| | AIL64906.1 | Hypothetical protein. (102 aa) |
| | csrA | Hypothetical protein; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. (69 aa) |
| | AIL64900.1 | Putative rhodanese-related sulfurtransferase; Belongs to the UPF0176 family. (272 aa) |
| | mutL | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (619 aa) |
| | rnc | Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (237 aa) |
| | AIL64878.1 | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (451 aa) |
| | AIL64874.1 | Uracil DNA glycosylase superfamily protein. (196 aa) |
| | rnd | Ribonuclease D. (386 aa) |
| | nrdE | Ribonucleoside-diphosphate reductase 2 subunit alpha; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. (609 aa) |
| | nrdB | Ribonucleoside-diphosphate reductase subunit beta; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family. (327 aa) |
| | AIL64855.1 | Putative DEAD-box ATP-dependent RNA helicase. (366 aa) |
| | rne | Ribonuclease E. (720 aa) |
| | pheS | Phenylalanine--tRNA ligase alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. (358 aa) |
| | pheT | Phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. (791 aa) |
| | dnaE1 | DNA polymerase III subunit alpha. (1144 aa) |
| | truB | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. (301 aa) |
| | pnp | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (745 aa) |
| | yciO | Translation factor (SUA5); Belongs to the SUA5 family. (231 aa) |
| | AIL64819.1 | Transposase. (78 aa) |
| | AIL64817.2 | Transposase. (130 aa) |
| | hin | DNA-invertase hin. (192 aa) |
| | AIL64801.1 | Hypothetical protein. (83 aa) |
| | AIL64800.1 | Transposase. (87 aa) |
| | AIL64799.1 | Integrase core domain protein. (319 aa) |
| | AIL64798.1 | Hypothetical protein. (99 aa) |
| | AIL64797.1 | Hypothetical protein. (189 aa) |
| | AIL64796.1 | Hypothetical protein. (95 aa) |
| | dnaC | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (500 aa) |
| | miaB_1 | (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB. (427 aa) |
| | proS | Proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro); Belongs to the class-II aminoacyl-tRNA synthetase family. ProS type 2 subfamily. (430 aa) |
| | AIL64779.1 | Hypothetical protein. (102 aa) |
| | AIL64778.2 | Transposase. (130 aa) |
| | rlmCD | 23S rRNA (uracil-C(5))-methyltransferase RlmCD; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (361 aa) |
| | AIL64758.1 | Transposase. (130 aa) |
| | AIL64757.1 | Hypothetical protein. (102 aa) |
| | AIL64755.1 | Hypothetical protein. (102 aa) |
| | AIL64754.1 | Transposase. (130 aa) |
| | AIL64753.1 | Transposase, IS30 family. (124 aa) |
| | AIL64752.1 | Transposase. (251 aa) |
| | AIL64751.1 | Integrase core domain protein. (319 aa) |
| | AIL64744.1 | YcfA-like protein. (63 aa) |
| | AIL64741.1 | Conjugal transfer protein TrbD; Type IV secretion system protein virB3. (107 aa) |
| | xthA_2 | Exodeoxyribonuclease III. (261 aa) |
| | rluB | Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. (235 aa) |
| | rsmD | Ribosomal RNA small subunit methyltransferase D. (187 aa) |
| | serS | Serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). (424 aa) |
| | AIL64692.1 | Transposase. (130 aa) |
| | AIL64691.1 | Hypothetical protein. (102 aa) |
| | AIL64682.1 | DnaA regulatory inactivator Hda; Belongs to the DnaA family. (222 aa) |
| | AIL64669.1 | arginyl-tRNA synthetase. (488 aa) |
| | nusA | N utilization substance protein A; Participates in both transcription termination and antitermination. (499 aa) |
| | rbfA | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. (124 aa) |
| | AIL64651.1 | Hypothetical protein. (102 aa) |
| | AIL64650.1 | Transposase. (130 aa) |
| | AIL64645.1 | Hypothetical protein. (2081 aa) |
| | polA | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (887 aa) |
| | AIL64638.1 | Transposase. (130 aa) |
| | AIL64637.1 | Hypothetical protein. (102 aa) |
| | AIL64629.1 | Hypothetical protein. (102 aa) |
| | AIL64628.1 | Transposase. (130 aa) |
| | xerD_1 | Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (309 aa) |
| | AIL64621.1 | Integrase core domain protein. (319 aa) |
| | topA | DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (853 aa) |
| | tlyA | 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA. (246 aa) |
| | apaG | CO2+/MG2+ efflux protein ApaG. (131 aa) |
| | AIL64607.1 | Hypothetical protein. (102 aa) |
| | AIL66128.2 | Hypothetical protein. (463 aa) |
| | AIL66126.1 | Phage-related protein. (111 aa) |
| | AIL66122.1 | Hypothetical protein. (613 aa) |
| | AIL66119.1 | Transposase. (130 aa) |
| | AIL66118.1 | Hypothetical protein. (102 aa) |
| | AIL66110.1 | Hypothetical protein. (165 aa) |
| | AIL66109.1 | Transposase. (130 aa) |
| | rnhB | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (203 aa) |
| | AIL66084.1 | Transposase. (130 aa) |
| | AIL66083.1 | Hypothetical protein. (102 aa) |
| | AIL66077.1 | Integrase core domain protein. (319 aa) |
| | AIL66074.1 | Hypothetical protein. (102 aa) |
| | AIL66073.1 | Transposase. (130 aa) |
| | AIL66071.1 | Integrase core domain protein. (319 aa) |
| | AIL66070.1 | Transposase. (251 aa) |
| | priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (744 aa) |
| | AIL66065.1 | Hypothetical protein. (102 aa) |
| | AIL66064.1 | Transposase. (130 aa) |
| | AIL66062.1 | Transposase. (130 aa) |
| | AIL66061.1 | Hypothetical protein. (102 aa) |
| | hisS | Histidine--tRNA ligase. (450 aa) |
| | rpoH | RNA polymerase sigma-32 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (293 aa) |
| | ligA | DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. (713 aa) |
| | rlmH | Ribosomal RNA large subunit methyltransferase H; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. (148 aa) |
| | radA | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (465 aa) |
| | AIL66038.1 | Integrase core domain protein. (319 aa) |
| | rlmN | Ribosomal RNA large subunit methyltransferase N; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family. (357 aa) |
| | AIL66028.1 | Ribonuclease VapC22. (138 aa) |
| | AIL66011.1 | Hypothetical protein. (308 aa) |
| | traC | DNA primase TraC. (319 aa) |
| | AIL65999.1 | Transposase. (130 aa) |
| | AIL65998.2 | Hypothetical protein. (102 aa) |
| | AIL65993.1 | Hypothetical protein. (102 aa) |
| | AIL65992.1 | Transposase. (130 aa) |
| | AIL65989.1 | Transposase. (130 aa) |
| | AIL65988.1 | Hypothetical protein. (102 aa) |
| | trmB | tRNA (guanine-N(7)-)-methyltransferase. (173 aa) |
| | dnaN | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (398 aa) |
| | dnaA | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (466 aa) |
| | AIL65960.1 | Ribonuclease J 1. (565 aa) |
| | ribD | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. (366 aa) |
| | dnaJ | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] (378 aa) |
| | trmD | tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. (238 aa) |
| | cca | CCA-adding enzyme; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (409 aa) |
| | AIL65914.1 | Hypothetical protein. (72 aa) |
| | AIL65913.1 | Transposase. (130 aa) |
| | AIL65912.1 | Hypothetical protein. (102 aa) |
| | AIL65911.1 | Hypothetical protein. (53 aa) |
| | AIL65883.1 | Transposase. (130 aa) |
| | AIL65882.1 | Hypothetical protein. (102 aa) |
| | AIL65878.1 | Hypothetical protein. (102 aa) |
| | AIL65877.1 | Transposase. (130 aa) |
| | rarA_2 | Replication-associated recombination protein A. (282 aa) |
| | argS | Arginine--tRNA ligase. (576 aa) |
| | AIL65858.1 | Hypothetical protein. (76 aa) |
| | mutM | Formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (273 aa) |
| | gltX1 | Glutamate--tRNA ligase 1; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (446 aa) |
| | AIL65848.1 | Integrase core domain protein. (319 aa) |
| | AIL65845.1 | Hypothetical protein. (102 aa) |
| | AIL65844.1 | Transposase. (130 aa) |
| | AIL65842.1 | Integrase core domain protein. (319 aa) |
| | AIL65833.1 | Integrase core domain protein. (319 aa) |
| | ssb | Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. (154 aa) |
| | uvrA | UvrABC system protein A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (959 aa) |
| | recA | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (341 aa) |
| | AIL65814.1 | Hypothetical protein. (102 aa) |
| | AIL65813.1 | Transposase. (130 aa) |
| | AIL65805.1 | Double-strand break repair protein AddB. (983 aa) |
| | AIL65785.1 | Hypothetical protein. (102 aa) |
| | AIL65784.1 | Transposase. (130 aa) |
| | rluD | Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (326 aa) |
| | AIL65769.2 | Transposase. (130 aa) |
| | AIL65768.1 | Hypothetical protein. (165 aa) |
| | mfd | Transcription-repair-coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1163 aa) |
| | recN | Recombination protein N; May be involved in recombinational repair of damaged DNA. (552 aa) |
| | AIL65743.1 | Transcriptional regulator BolA; Belongs to the BolA/IbaG family. (79 aa) |
| | glyS | Glycine--tRNA ligase beta subunit. (686 aa) |
| | glyQ | Glycine--tRNA ligase alpha subunit. (287 aa) |
| | thrS | Threonine--tRNA ligase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). (635 aa) |
| | AIL65714.2 | Transposase. (130 aa) |
| | AIL65713.1 | Hypothetical protein. (102 aa) |
| | trmJ | tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. (243 aa) |
| | cysS | Cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. (460 aa) |
| | dnaX_2 | DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (569 aa) |
| | recR | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (197 aa) |
| | AIL65689.1 | Transposase. (130 aa) |
| | AIL65688.1 | Hypothetical protein. (102 aa) |
| | bolA | BolA family transcriptional regulator; Belongs to the BolA/IbaG family. (88 aa) |
| | recO | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (243 aa) |
| | sigA | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (666 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (601 aa) |
| | rph | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (243 aa) |
| | ycfH | Putative deoxyribonuclease YcfH. (262 aa) |
| | metG | Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily. (516 aa) |
| | yrrK | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (147 aa) |
| | AIL65623.1 | Hypothetical protein. (358 aa) |
| | AIL65609.1 | Hypothetical protein. (102 aa) |
| | AIL65608.1 | Transposase. (130 aa) |
| | rpoA | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (340 aa) |
| | AIL64606.1 | Transposase. (130 aa) |
| | AIL64602.1 | Transposase. (130 aa) |
| | AIL64601.1 | Hypothetical protein. (102 aa) |
| | AIL64587.1 | DNA polymerase III subunit chi. (154 aa) |
| | AIL64579.1 | Transposase. (130 aa) |
| | uvrC | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (619 aa) |
