7 items (Brevundimonas sp. DS20) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	kduI	5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (281 aa)
	ALJ08964.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
	ALJ08965.1	2-keto-3-deoxygluconate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)
	JL11_11945	Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (499 aa)
	ALJ08970.1	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (493 aa)
	uxaC	Glucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)
	ALJ09818.1	Keto-deoxy-phosphogluconate aldolase; Catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)

Your Current Organism:

Brevundimonas sp. DS20

NCBI taxonomy Id: 1532555
Other names: B. sp. DS20

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALJ08964.1	ALJ08965.1	JL11_11915	JL11_11920	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-keto-3-deoxygluconate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
ALJ08964.1	ALJ08970.1	JL11_11915	JL11_11950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
ALJ08964.1	JL11_11945	JL11_11915	JL11_11945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
ALJ08964.1	kduI	JL11_11915	JL11_06930	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.	0.976
ALJ08964.1	uxaC	JL11_11915	JL11_11955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.572
ALJ08965.1	ALJ08964.1	JL11_11920	JL11_11915	2-keto-3-deoxygluconate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
ALJ08965.1	ALJ09818.1	JL11_11920	JL11_16795	2-keto-3-deoxygluconate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Keto-deoxy-phosphogluconate aldolase; Catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
ALJ08965.1	JL11_11945	JL11_11920	JL11_11945	2-keto-3-deoxygluconate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907
ALJ08965.1	kduI	JL11_11920	JL11_06930	2-keto-3-deoxygluconate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.	0.723
ALJ08965.1	uxaC	JL11_11920	JL11_11955	2-keto-3-deoxygluconate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500
ALJ08970.1	ALJ08964.1	JL11_11950	JL11_11915	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
ALJ08970.1	JL11_11945	JL11_11950	JL11_11945	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
ALJ08970.1	kduI	JL11_11950	JL11_06930	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.	0.552
ALJ08970.1	uxaC	JL11_11950	JL11_11955	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ALJ09818.1	ALJ08965.1	JL11_16795	JL11_11920	Keto-deoxy-phosphogluconate aldolase; Catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-keto-3-deoxygluconate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
ALJ09818.1	JL11_11945	JL11_16795	JL11_11945	Keto-deoxy-phosphogluconate aldolase; Catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.538
ALJ09818.1	kduI	JL11_16795	JL11_06930	Keto-deoxy-phosphogluconate aldolase; Catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.	5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.	0.675
ALJ09818.1	uxaC	JL11_16795	JL11_11955	Keto-deoxy-phosphogluconate aldolase; Catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
JL11_11945	ALJ08964.1	JL11_11945	JL11_11915	Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
JL11_11945	ALJ08965.1	JL11_11945	JL11_11920	Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-keto-3-deoxygluconate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907