10 items (Brevundimonas sp. DS20) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALJ07071.1	UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
	ALJ07530.1	Ribulose phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family. (223 aa)
	ALJ08069.1	UDP-glucose 6-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)
	kduI	5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (281 aa)
	ALJ08101.1	Oligogalacturonate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (487 aa)
	ALJ08114.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (369 aa)
	ALJ08964.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
	JL11_11945	Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (499 aa)
	ALJ08970.1	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (493 aa)
	uxaC	Glucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)

Your Current Organism:

Brevundimonas sp. DS20

NCBI taxonomy Id: 1532555
Other names: B. sp. DS20

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALJ07071.1	ALJ08069.1	JL11_00980	JL11_06730	UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	UDP-glucose 6-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
ALJ07530.1	ALJ08964.1	JL11_03630	JL11_11915	Ribulose phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.804
ALJ07530.1	JL11_11945	JL11_03630	JL11_11945	Ribulose phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family.	Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
ALJ08069.1	ALJ07071.1	JL11_06730	JL11_00980	UDP-glucose 6-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
ALJ08101.1	ALJ08114.1	JL11_06950	JL11_07020	Oligogalacturonate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.522
ALJ08101.1	kduI	JL11_06950	JL11_06930	Oligogalacturonate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.	0.916
ALJ08114.1	ALJ08101.1	JL11_07020	JL11_06950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oligogalacturonate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.522
ALJ08114.1	kduI	JL11_07020	JL11_06930	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.	0.648
ALJ08964.1	ALJ07530.1	JL11_11915	JL11_03630	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribulose phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family.	0.804
ALJ08964.1	ALJ08970.1	JL11_11915	JL11_11950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
ALJ08964.1	JL11_11945	JL11_11915	JL11_11945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
ALJ08964.1	kduI	JL11_11915	JL11_06930	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.	0.976
ALJ08964.1	uxaC	JL11_11915	JL11_11955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.572
ALJ08970.1	ALJ08964.1	JL11_11950	JL11_11915	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
ALJ08970.1	JL11_11945	JL11_11950	JL11_11945	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
ALJ08970.1	kduI	JL11_11950	JL11_06930	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.	0.552
ALJ08970.1	uxaC	JL11_11950	JL11_11955	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
JL11_11945	ALJ07530.1	JL11_11945	JL11_03630	Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribulose phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family.	0.800
JL11_11945	ALJ08964.1	JL11_11945	JL11_11915	Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
JL11_11945	ALJ08970.1	JL11_11945	JL11_11950	Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978