(23 nodes) Mixed, incl. Rhamnose metabolism, and Prolyl oligopeptidase family network (Paenibacillus sp. FSLR70273)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIQ45058.1	Rhamnogalacturonyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
	AIQ45059.1	D-galactosyl-beta-1-4-L-rhamnose phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (719 aa)
	AIQ45705.1	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	AIQ45706.1	Tetratricopeptide repeat containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1110 aa)
	AIQ45834.1	alpha-L-rhamnosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (892 aa)
	AIQ45952.1	Glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	AIQ45953.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1031 aa)
	AIQ46614.1	L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose. (104 aa)
	AIQ47218.1	Beta-glucuronidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (936 aa)
	rhaD	Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde. (281 aa)
	rhaA	Sugar isomerase; Catalyzes the formation of L-rhamnulose from L-rhamnose; Derived by automated computational analysis using gene prediction method: Protein Homology. (418 aa)
	rhaB	Rhamnulokinase; Involved in the catabolism of L-rhamnose (6-deoxy-L-mannose). Catalyzes the transfer of the gamma-phosphate group from ATP to the 1- hydroxyl group of L-rhamnulose to yield L-rhamnulose 1-phosphate. Belongs to the rhamnulokinase family. (490 aa)
	AIQ48382.1	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	AIQ48438.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
	AIQ48514.1	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (866 aa)
	AIQ48515.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
	AIQ48554.1	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	AIQ48834.1	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	AIQ48935.1	Fucose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RbsD / FucU family. (145 aa)
	AIQ48936.1	Aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
	AIQ48937.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (500 aa)
	fucI	Sugar isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose. (588 aa)
	AIQ49272.1	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (772 aa)

Your Current Organism:

Paenibacillus sp. FSLR70273

NCBI taxonomy Id: 1536772
Other names: P. sp. FSL R7-0273, Paenibacillus sp. FSL R7-0273

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIQ45058.1	AIQ45059.1	R70723_03415	R70723_03420	Rhamnogalacturonyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	D-galactosyl-beta-1-4-L-rhamnose phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
AIQ45058.1	AIQ48514.1	R70723_03415	R70723_23295	Rhamnogalacturonyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.453
AIQ45059.1	AIQ45058.1	R70723_03420	R70723_03415	D-galactosyl-beta-1-4-L-rhamnose phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Rhamnogalacturonyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
AIQ45059.1	AIQ48514.1	R70723_03420	R70723_23295	D-galactosyl-beta-1-4-L-rhamnose phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.612
AIQ45705.1	AIQ45706.1	R70723_07240	R70723_07245	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tetratricopeptide repeat containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.872
AIQ45705.1	AIQ48515.1	R70723_07240	R70723_23300	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.615
AIQ45706.1	AIQ45705.1	R70723_07245	R70723_07240	Tetratricopeptide repeat containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.872
AIQ45706.1	AIQ45834.1	R70723_07245	R70723_08040	Tetratricopeptide repeat containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-rhamnosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.560
AIQ45706.1	AIQ47218.1	R70723_07245	R70723_15990	Tetratricopeptide repeat containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-glucuronidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.716
AIQ45706.1	AIQ48554.1	R70723_07245	R70723_23535	Tetratricopeptide repeat containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
AIQ45706.1	AIQ49272.1	R70723_07245	R70723_27785	Tetratricopeptide repeat containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.518
AIQ45834.1	AIQ45706.1	R70723_08040	R70723_07245	alpha-L-rhamnosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tetratricopeptide repeat containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.560
AIQ45834.1	AIQ45953.1	R70723_08040	R70723_08710	alpha-L-rhamnosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.647
AIQ45834.1	AIQ46614.1	R70723_08040	R70723_12570	alpha-L-rhamnosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.	0.747
AIQ45834.1	AIQ47218.1	R70723_08040	R70723_15990	alpha-L-rhamnosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-glucuronidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532
AIQ45834.1	AIQ48382.1	R70723_08040	R70723_22530	alpha-L-rhamnosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546
AIQ45834.1	AIQ48438.1	R70723_08040	R70723_22850	alpha-L-rhamnosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.583
AIQ45834.1	AIQ48514.1	R70723_08040	R70723_23295	alpha-L-rhamnosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.534
AIQ45834.1	AIQ48834.1	R70723_08040	R70723_25195	alpha-L-rhamnosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.550
AIQ45834.1	AIQ48937.1	R70723_08040	R70723_25770	alpha-L-rhamnosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661