(55 nodes) Mixed, incl. Stilbenoid, diarylheptanoid and gingerol biosynthesis, and trans-cinnamate-CoA ligase activity network (Brachypodium distachyon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0Q3FGP6	Uncharacterized protein. (291 aa)
	A0A0Q3FH21	Uncharacterized protein; Belongs to the cytochrome P450 family. (540 aa)
	A0A0Q3JNS6	Phenylalanine ammonia-lyase. (716 aa)
	A0A0Q3L341	Epimerase domain-containing protein. (357 aa)
	A0A0Q3LMI1	Epimerase domain-containing protein. (416 aa)
	A0A0Q3NHX6	Uncharacterized protein. (454 aa)
	A0A0Q3S2B6	Uncharacterized protein. (474 aa)
	A0A2K2CYW7	PKS_ER domain-containing protein. (431 aa)
	A0A2K2D124	Uncharacterized protein. (655 aa)
	A0A2K2D566	Epimerase domain-containing protein. (330 aa)
	A0A2K2DDE4	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (510 aa)
	I1GTD4_BRADI	Hydrolase_4 domain-containing protein. (329 aa)
	I1GVQ1_BRADI	Uncharacterized protein. (572 aa)
	I1GXP2_BRADI	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (509 aa)
	I1H0A5_BRADI	Uncharacterized protein. (438 aa)
	I1H0A6_BRADI	Uncharacterized protein. (442 aa)
	I1H0C0_BRADI	Epimerase domain-containing protein. (339 aa)
	I1H0Q2_BRADI	Uncharacterized protein. (262 aa)
	I1H8V8_BRADI	Uncharacterized protein. (442 aa)
	I1H8V9_BRADI	Uncharacterized protein. (446 aa)
	I1H9M3_BRADI	Uncharacterized protein. (545 aa)
	I1HF00_BRADI	Hydrolase_4 domain-containing protein. (326 aa)
	I1HI50_BRADI	Uncharacterized protein; Belongs to the cytochrome P450 family. (514 aa)
	I1HKP5_BRADI	Uncharacterized protein; Belongs to the cytochrome P450 family. (501 aa)
	I1HP11_BRADI	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (500 aa)
	I1HQI1_BRADI	Hydrolase_4 domain-containing protein. (377 aa)
	I1HSV5_BRADI	Uncharacterized protein; Belongs to the cytochrome P450 family. (505 aa)
	I1HUA9_BRADI	Uncharacterized protein. (554 aa)
	I1HV88_BRADI	Uncharacterized protein. (435 aa)
	I1HV89_BRADI	Uncharacterized protein. (436 aa)
	I1HV90_BRADI	Uncharacterized protein. (435 aa)
	I1HV91_BRADI	Uncharacterized protein. (433 aa)
	I1HXV5_BRADI	Uncharacterized protein. (553 aa)
	CAD5	Cinnamyl alcohol dehydrogenase 5. (360 aa)
	I1I2A9_BRADI	Uncharacterized protein. (566 aa)
	I1I2J1_BRADI	Epimerase domain-containing protein. (345 aa)
	I1I2Z4_BRADI	Hydrolase_4 domain-containing protein. (371 aa)
	I1I7E1_BRADI	Uncharacterized protein. (439 aa)
	I1I7E4_BRADI	Epimerase domain-containing protein. (361 aa)
	I1I7J1_BRADI	Uncharacterized protein. (548 aa)
	I1I9K7_BRADI	Uncharacterized protein; Belongs to the cytochrome P450 family. (537 aa)
	I1IBH8_BRADI	Uncharacterized protein. (442 aa)
	I1IBL7_BRADI	Phenylalanine ammonia-lyase. (712 aa)
	I1IBR5_BRADI	Phenylalanine ammonia-lyase. (707 aa)
	I1IBR6_BRADI	Phenylalanine ammonia-lyase. (717 aa)
	I1IBR7_BRADI	Phenylalanine ammonia-lyase. (711 aa)
	I1ICU8_BRADI	Uncharacterized protein. (574 aa)
	I1IDR7_BRADI	Epimerase domain-containing protein. (347 aa)
	I1IQ77_BRADI	Uncharacterized protein. (433 aa)
	I1IR50_BRADI	Uncharacterized protein. (250 aa)
	I1IVC0_BRADI	Hydrolase_4 domain-containing protein. (296 aa)
	I1IWI1_BRADI	PKS_ER domain-containing protein. (361 aa)
	I1IWK7_BRADI	Uncharacterized protein. (632 aa)
	I1IZB2_BRADI	Uncharacterized protein. (443 aa)
	I1IZQ0_BRADI	Phenylalanine ammonia-lyase. (715 aa)

Your Current Organism:

Brachypodium distachyon

NCBI taxonomy Id: 15368
Other names: B. distachyon, Brachypodium distachyon (L.) P.Beauv., annual false brome, false brome, purple false brome, stiff brome

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0Q3FGP6	A0A0Q3JNS6	A0A0Q3FGP6	A0A0Q3JNS6	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.583
A0A0Q3FGP6	A0A0Q3L341	A0A0Q3FGP6	A0A0Q3L341	Uncharacterized protein.	Epimerase domain-containing protein.	0.811
A0A0Q3FGP6	A0A0Q3LMI1	A0A0Q3FGP6	A0A0Q3LMI1	Uncharacterized protein.	Epimerase domain-containing protein.	0.812
A0A0Q3FGP6	A0A0Q3NHX6	A0A0Q3FGP6	A0A0Q3NHX6	Uncharacterized protein.	Uncharacterized protein.	0.655
A0A0Q3FGP6	A0A0Q3S2B6	A0A0Q3FGP6	A0A0Q3S2B6	Uncharacterized protein.	Uncharacterized protein.	0.664
A0A0Q3FGP6	A0A2K2D124	A0A0Q3FGP6	A0A2K2D124	Uncharacterized protein.	Uncharacterized protein.	0.755
A0A0Q3FGP6	A0A2K2D566	A0A0Q3FGP6	A0A2K2D566	Uncharacterized protein.	Epimerase domain-containing protein.	0.812
A0A0Q3FGP6	A0A2K2DDE4	A0A0Q3FGP6	A0A2K2DDE4	Uncharacterized protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.459
A0A0Q3FGP6	I1GTD4_BRADI	A0A0Q3FGP6	I1GTD4	Uncharacterized protein.	Hydrolase_4 domain-containing protein.	0.527
A0A0Q3FGP6	I1GVQ1_BRADI	A0A0Q3FGP6	I1GVQ1	Uncharacterized protein.	Uncharacterized protein.	0.718
A0A0Q3FGP6	I1GXP2_BRADI	A0A0Q3FGP6	I1GXP2	Uncharacterized protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.460
A0A0Q3FGP6	I1H0A5_BRADI	A0A0Q3FGP6	I1H0A5	Uncharacterized protein.	Uncharacterized protein.	0.679
A0A0Q3FGP6	I1H0A6_BRADI	A0A0Q3FGP6	I1H0A6	Uncharacterized protein.	Uncharacterized protein.	0.655
A0A0Q3FGP6	I1H0C0_BRADI	A0A0Q3FGP6	I1H0C0	Uncharacterized protein.	Epimerase domain-containing protein.	0.811
A0A0Q3FGP6	I1H0Q2_BRADI	A0A0Q3FGP6	I1H0Q2	Uncharacterized protein.	Uncharacterized protein.	0.903
A0A0Q3FGP6	I1H8V8_BRADI	A0A0Q3FGP6	I1H8V8	Uncharacterized protein.	Uncharacterized protein.	0.655
A0A0Q3FGP6	I1H8V9_BRADI	A0A0Q3FGP6	I1H8V9	Uncharacterized protein.	Uncharacterized protein.	0.655
A0A0Q3FGP6	I1H9M3_BRADI	A0A0Q3FGP6	I1H9M3	Uncharacterized protein.	Uncharacterized protein.	0.755
A0A0Q3FGP6	I1HF00_BRADI	A0A0Q3FGP6	I1HF00	Uncharacterized protein.	Hydrolase_4 domain-containing protein.	0.521
A0A0Q3FGP6	I1HKP5_BRADI	A0A0Q3FGP6	I1HKP5	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.668